View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4267_low_90 (Length: 233)
Name: NF4267_low_90
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_low_90 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 10 - 215
Target Start/End: Original strand, 11859061 - 11859266
Alignment:
| Q |
10 |
agagagaagaaggagattatagataaactgctgaagatgaacaaggttgatactgctgttccttttgtaattgctattgttggtgttcctggaattggca |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11859061 |
agagagaagaaggagattatagataaactgctgaagatgaacaaggttgatactgctgttccttttgtaattgctattgttggtgttcctggaattggca |
11859160 |
T |
|
| Q |
110 |
aaacaaaacttgctcgtctcgtttgtgaagatgagcaagtcaaagggagttctggtttccaagcaatttggatcaatggccctcatcaccaatttgatgt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
11859161 |
aaacaaaacttgctcgtctcgtttgtgaagatgagcaagtcaaagggagttctggtttccaagcaatttggatcaatggtcttcatcaccaatttgatgt |
11859260 |
T |
|
| Q |
210 |
tgaatc |
215 |
Q |
| |
|
|||||| |
|
|
| T |
11859261 |
tgaatc |
11859266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 12037862 - 12038034
Alignment:
| Q |
13 |
gagaagaaggagattatagataaactgctgaagatgaacaaggttgatactgctgttccttttgtaattgctattgttggtgttcctggaattggcaaaa |
112 |
Q |
| |
|
|||||| | ||| |||||||||||||| |||| |||| || |||| ||||||||||| |||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
12037862 |
gagaaggaagagcttatagataaactggtgaacctgaagaacactgatgctgctgttcctgttgttattgttattgttggtgttcctggaattggcaaaa |
12037961 |
T |
|
| Q |
113 |
caaaacttgctcgtctcgtttgtgaagatgagcaagtcaaagggagttctggtttccaagcaatttggatcaa |
185 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||| || || || ||| || ||| ||||||||||||| |
|
|
| T |
12037962 |
caaaacttgctcatctcgtttgtgaggatgagcaagtcgaaatgaattttgggttacaaccaatttggatcaa |
12038034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 62 - 154
Target Start/End: Original strand, 11826945 - 11827037
Alignment:
| Q |
62 |
ctgctgttccttttgtaattgctattgttggtgttcctggaattggcaaaacaaaacttgctcgtctcgtttgtgaagatgagcaagtcaaag |
154 |
Q |
| |
|
||||||||||| || | |||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||| || ||||||||||||| |
|
|
| T |
11826945 |
ctgctgttcctgtttttattgctattgttggtgttactggaattgggaaaacaaaacttgctcatctcgtttgtgaggacgagcaagtcaaag |
11827037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 183
Target Start/End: Complemental strand, 11903379 - 11903281
Alignment:
| Q |
85 |
attgttggtgttcctggaattggcaaaacaaaacttgctcgtctcgtttgtgaagatgagcaagtcaaagggagttctggtttccaagcaatttggatc |
183 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||| ||||| |||||||| |||||||||| || ||||||| || ||||||||||| |
|
|
| T |
11903379 |
attgttggtgttcctggaattgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtcaaagctcattttggtttcgaaccaatttggatc |
11903281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 11730826 - 11730895
Alignment:
| Q |
85 |
attgttggtgttcctggaattggcaaaacaaaacttgctcgtctcgtttgtgaagatgagcaagtcaaag |
154 |
Q |
| |
|
|||||||||||||| ||||| || || ||||||||||| || || ||||| || |||||||||||||||| |
|
|
| T |
11730826 |
attgttggtgttccgggaatagggaagacaaaacttgcacggcttgtttgcgaggatgagcaagtcaaag |
11730895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 11730382 - 11730451
Alignment:
| Q |
85 |
attgttggtgttcctggaattggcaaaacaaaacttgctcgtctcgtttgtgaagatgagcaagtcaaag |
154 |
Q |
| |
|
|||||||||||| | ||||| || || ||||||||||| ||||| ||||| | |||||||||||||||| |
|
|
| T |
11730382 |
attgttggtgtttcaggaataggaaagacaaaacttgcacgtcttgtttgcaaggatgagcaagtcaaag |
11730451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University