View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4268_high_16 (Length: 255)
Name: NF4268_high_16
Description: NF4268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4268_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 44973132 - 44973358
Alignment:
| Q |
19 |
cgtcgttctcttctctcactcggcggcggagcctgttccggaagcttggccggagcagtttcattccgtactattcatgaacagaagcggatccctacag |
118 |
Q |
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| T |
44973132 |
cgtcgttctcttctctcactcggcggcggagcctgttccggcagcttggccggagcagtttcattccgtactattcatgaacagaagcggatccctacag |
44973231 |
T |
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| Q |
119 |
aaattggacttatggtacgactggcccaacggtcgaaacttcaatatcatacaagatcaactcaatgatgttgtagattacgaccttgaatggaccaatg |
218 |
Q |
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| T |
44973232 |
aaattggacttatggtacgactggcccaacggtcgaaacttcaatatcatccaagatcaactcaatgatgttgtagattacgaccttgaatggaccaatg |
44973331 |
T |
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| Q |
219 |
gaacctccttcatgtacactcttcatc |
245 |
Q |
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| T |
44973332 |
gaacctccttcatgtacactctccatc |
44973358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 64 - 245
Target Start/End: Original strand, 44974707 - 44974888
Alignment:
| Q |
64 |
ttggccggagcagtttcattccgtactattcatgaacagaagcggatccctacagaaattggacttatggtacgactggcccaacggtcgaaacttcaat |
163 |
Q |
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| T |
44974707 |
ttggccagagcagtttcatgccttaatgttcatgaacaagagcggagtcctgcaaaaagtggacttatggtacgactggcctaacggtcgaaacttcaac |
44974806 |
T |
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| Q |
164 |
atcatacaagatcaactcaatgatgttgtagattacgaccttgaatggaccaatggaacctccttcatgtacactcttcatc |
245 |
Q |
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| T |
44974807 |
atcatccaaaatcaactcaatgatgtcgtcgtttacgacctcgaatggaccaacggtacctccttcatctacactctccatc |
44974888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 228
Target Start/End: Complemental strand, 47392837 - 47392737
Alignment:
| Q |
125 |
gacttatggtacgactggcccaacggtcgaaacttcaatatcatacaagatcaactcaatgatgttgtagattacgaccttgaatggaccaatggaacct |
224 |
Q |
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|||||||||||||| |||||||| || |||||||||||||| || ||| |||| || ||||||| | | || ||||||||||||| |||||| ||| |
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| T |
47392837 |
gacttatggtacgattggcccaatggacgaaacttcaatattatccaatatcagct---tgatgttctcaaatatgaccttgaatggaacaatggcacca |
47392741 |
T |
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| Q |
225 |
cctt |
228 |
Q |
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|||| |
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| T |
47392740 |
cctt |
47392737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 228
Target Start/End: Original strand, 40074519 - 40074619
Alignment:
| Q |
125 |
gacttatggtacgactggcccaacggtcgaaacttcaatatcatacaagatcaactcaatgatgttgtagattacgaccttgaatggaccaatggaacct |
224 |
Q |
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|||||||||||||| |||||||| || |||||||||||||| || ||| |||| || ||||||| | | || ||||||||||||| |||||| ||| |
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| T |
40074519 |
gacttatggtacgattggcccaatggacgaaacttcaatattatccaatatcagct---tgatgttctcaaatatgaccttgaatggaacaatggcacca |
40074615 |
T |
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| Q |
225 |
cctt |
228 |
Q |
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|||| |
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| T |
40074616 |
cctt |
40074619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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