View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4268_high_20 (Length: 236)
Name: NF4268_high_20
Description: NF4268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4268_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 16688145 - 16688330
Alignment:
| Q |
1 |
caaaaccttctaactcttcttcacttcgaacggaaaaattgcaaaatctattcactcttgcaatcattgtggttagtacatcaatacctgttcacacgtt |
100 |
Q |
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| T |
16688145 |
caaaaccttctaactcttcttcacttcgaacggaaaaattgcaaaatctattcactcttgcaatcattgtggttagtacatcaatacctgttcacacgtt |
16688244 |
T |
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| Q |
101 |
gcaaagaccaattaaatattctcttattaattaatataaagttcctcaaaataattaatctaaatatgcattacaaaaaggccataa |
187 |
Q |
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| T |
16688245 |
g-aaagaccaattaaatattctcttattaattaatataaagtttctcaaaataattaatcaaaatatgcattacaaaaaggccataa |
16688330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 16688351 - 16688386
Alignment:
| Q |
186 |
aatgctatcatataaagagataaactttgttactat |
221 |
Q |
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| T |
16688351 |
aatgctatcatataaagagataaactttgttactat |
16688386 |
T |
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