View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4268_high_23 (Length: 230)
Name: NF4268_high_23
Description: NF4268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4268_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 38149424 - 38149209
Alignment:
| Q |
1 |
tcagtttccaagtaatcaggatcaacttgatcagcacgagtaggatttacaatgaggacttcccttgtatccatccatttgcagggagtccctttctgca |
100 |
Q |
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| T |
38149424 |
tcagtttccaagtaatcaggatcaacttgatcagcatgagtaggatttacaatgaggacttcccttgtatccatccatttgcagggagtccctttctgca |
38149325 |
T |
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| Q |
101 |
aagtagaaaggaagcatgatgcaatcaacacaactcacataaatatataaaaacaaagtgtacttatttcttattaaaacaacataccttcttaacaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38149324 |
aagtagaaaggaagcatgatgcaatcaacacaactcacataaatatataaaaacaaagtgtacttatttcttattaaaacaacataccttcttaacaaca |
38149225 |
T |
|
| Q |
201 |
taagacaatatttgtg |
216 |
Q |
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|||||||||||||||| |
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| T |
38149224 |
taagacaatatttgtg |
38149209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 35096906 - 35096988
Alignment:
| Q |
1 |
tcagtttccaagtaatcaggatcaacttgatcagcacgagtaggatttacaatgaggacttcccttgtatccatccatttgca |
83 |
Q |
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|||| |||||| || || ||||||||||||| || || ||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
35096906 |
tcagattccaaatagtcgggatcaacttgattagaactagtaggatttacaatcaagacttcccttgtatccatccatttgca |
35096988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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