View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4268_high_6 (Length: 456)
Name: NF4268_high_6
Description: NF4268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4268_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 1963515 - 1963952
Alignment:
| Q |
1 |
ccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcacatggcctcta |
100 |
Q |
| |
|
|||| |||||||||| |||||||||| ||| |||| ||||||||||||||||| |||||||||||| || ||||||||||||||||||| |||||||| |
|
|
| T |
1963515 |
ccttagtcacagttccattggtgggtttttgtctcattgtggttggaattcaacccttgagagtgtggtgtatggtgtgccactaatcacttggcctctg |
1963614 |
T |
|
| Q |
101 |
tttgctgagcagagaacgaatgcggttttgttgagtgaaggcctaaaagtgggactgaggccaagagttaacgagaatggcattgtggaaagggtagaaa |
200 |
Q |
| |
|
| ||||||||||||||| ||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1963615 |
tatgctgagcagagaacaaatgcagttttgctctgtgaaggcctaaaagtgggactgaggccaagagttaacgagaatggcattgtggaaagggtagaaa |
1963714 |
T |
|
| Q |
201 |
ttgctgagttgatcaagtgtctcatggaaggggaagaaggtgggaaactgcgtaataatatgaaggaatttaaagaagctgctagtagtgtacataaaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1963715 |
ttgctgagttgatcaagtgtctcatggaaggggaagaaggtgggaaactgcgtaataatatgaaggaatttaaagaagctgctagtagtgtacataaaga |
1963814 |
T |
|
| Q |
301 |
agatggttctactacaaagactctttctcaattagcactcaagtggagtaactttggtatagaaaaacaagttttatgacaatatgtattattaagatca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1963815 |
agatggttctactacaaagactctttctcaattagcactcaagtggagtaactttggtatagaaaaacaagttttatgacaatatgtattattaagatca |
1963914 |
T |
|
| Q |
401 |
ccttatttggcctaatatttcacagtttacgtatcttc |
438 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1963915 |
ccttatttggccttatatttcacagtttacgtatcttc |
1963952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 2018297 - 2017907
Alignment:
| Q |
1 |
ccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcacatggcctcta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2018297 |
ccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcacatggcctcta |
2018198 |
T |
|
| Q |
101 |
tttgctgagcagagaacgaatgcggttttgttgagtgaaggcctaaaagtgggactgaggccaagagttaacgagaatggcattgtggaaagggtagaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||| |||||||||||||||||| |||| ||| |
|
|
| T |
2018197 |
tttgctgagcagagaacgaatgcggttttgttgagtgaaggactaaaagtgggactgaggccaaaaattaatcagaatggcattgtggaaaaggtacaaa |
2018098 |
T |
|
| Q |
201 |
ttgctgagttgatcaagtgtctcatggaaggggaagaaggtgggaaactgcgtaataatatgaaggaatttaaagaagctgctagtagtgtacataaaga |
300 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||| |||||| ||||| ||||||||| |
|
|
| T |
2018097 |
ttgcagagttaatcaagtgtctcatggaaggggaagaaggtgggaaactgcgcaaaaatatgaaggaattaaaagaatctgctaatagtgcacataaaga |
2017998 |
T |
|
| Q |
301 |
agatggttctactacaaagactctttctcaattagcactcaagtggagtaactttggtatagaaaaacaagttttatgacaatatgtattat |
392 |
Q |
| |
|
||||| ||| ||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2017997 |
tgatggatcttttacaaagacactttctcaattagcactcaagtggag-aaatttggtatagaaaaacaagttgtatgacaatatgtattat |
2017907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 2014914 - 2014515
Alignment:
| Q |
1 |
ccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcacatggcctcta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2014914 |
ccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaatgcttgagagtgtgttgcatggtgtgccactaatcacatggcctcta |
2014815 |
T |
|
| Q |
101 |
tttgctgagcagagaacgaatgcggttttgttgagtgaaggcctaaaagtgggactgaggccaagagttaacgagaatggcattgtggaaagggtagaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||| |||||||||||||||||| |||| ||| |
|
|
| T |
2014814 |
tttgctgagcagagaacgaatgcggttttgttgagtgaaggactaaaagtgggactgaggccaaaaattaatcagaatggcattgtggaaaaggtacaaa |
2014715 |
T |
|
| Q |
201 |
ttgctgagttgatcaagtgtctcatggaaggggaagaaggtgggaaactgcgtaataatatgaaggaatttaaagaagctgctagtagtgtacataaaga |
300 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||| |||||| ||||| ||||||||| |
|
|
| T |
2014714 |
ttgcagagttaatcaagtgtctcatggaaggggaagaaggtgggaaactgcgcaaaaatatgaaggaattaaaagaatctgctaatagtgcacataaaga |
2014615 |
T |
|
| Q |
301 |
agatggttctactacaaagactctttctcaattagcactcaagtggagtaactttggtatagaaaaacaagttttatgacaatatgtattattaagatca |
400 |
Q |
| |
|
|| || ||| |||||||||||||||||||||||| || |||||||| ||||||||||| ||||||||||||| ||||||||||| | ||||||||||| |
|
|
| T |
2014614 |
tgacgggtctgctacaaagactctttctcaattagttcttaagtggagaaactttggtattgaaaaacaagtttaatgacaatatgcaatattaagatca |
2014515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 14 - 348
Target Start/End: Complemental strand, 2004501 - 2004167
Alignment:
| Q |
14 |
tcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcacatggcctctatttgctgagcaga |
113 |
Q |
| |
|
||||| || |||||||||||||| ||||| ||||||||||| || ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2004501 |
tcagtcggcgggttcttgactcattgtggctggaattcaaccctagagagtgtggtgcatggtgtgccactaataacatggcctctatttgctgagcaga |
2004402 |
T |
|
| Q |
114 |
gaacgaatgcggttttgttgagtgaaggcctaaaagtgggactgaggccaagagttaacgagaatggcattgtggaaagggtagaaattgctgagttgat |
213 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||||||||| ||||| |||| ||||| || |||||||| |||||||||||||| ||||| || |||| |
|
|
| T |
2004401 |
aaatgaatgcggttttgttgagtgaaggactaaaagtgggattgagggcaagtgttaatgaaaatggcatagtggaaagggtagaggttgctaaggtgat |
2004302 |
T |
|
| Q |
214 |
caagtgtctcatggaaggggaagaaggtgggaaactgcgtaataatatgaaggaatttaaagaagctgctagtagtgtacataaagaagatggttctact |
313 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||| ||||| ||||||||||| |||||| ||||| | || ||||||||||||||| || |
|
|
| T |
2004301 |
caagtgtctcatggaaggggaagaaggtgagaaattgcgcaataacatgaaggaattaaaagaatctgcttcgaatgctgtcaaagaagatggttcttct |
2004202 |
T |
|
| Q |
314 |
acaaagactctttctcaattagcactcaagtggag |
348 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
2004201 |
acaaacactatttctcaattagcactcaagtggag |
2004167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 18 - 348
Target Start/End: Original strand, 1969144 - 1969474
Alignment:
| Q |
18 |
ttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcacatggcctctatttgctgagcagagaac |
117 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| || |
|
|
| T |
1969144 |
ttggtggattcttgactcattgtggctggaattcaacccttgagagtgtgttgcatggtgtgccactaatcacatggcctttgtttgctgagcagaaaat |
1969243 |
T |
|
| Q |
118 |
gaatgcggttttgttgagtgaaggcctaaaagtgggactgaggccaagagttaacgagaatggcattgtggaaagggtagaaattgctgagttgatcaag |
217 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||||||||||||| || || |||||||||||||| | ||| ||| | || |||||||| |
|
|
| T |
1969244 |
gaatgccgttttgctgagtgaaggcctaaaagtgggactgaggccaagagttaatgaaaacggcattgtggaaagagaagaggttgttaaggtgatcaag |
1969343 |
T |
|
| Q |
218 |
tgtctcatggaaggggaagaaggtgggaaactgcgtaataatatgaaggaatttaaagaagctgctagtagtgtacataaagaagatggttctactacaa |
317 |
Q |
| |
|
||||||||||||| |||||||||| ||| |||| ||||| ||||||||||| |||||||||||| | || | ||||||||||||||| |||||| |
|
|
| T |
1969344 |
cgtctcatggaaggagaagaaggtgagaagttgcgcaataacatgaaggaattaaaagaagctgcttcaaatgcaatcaaagaagatggttcttctacaa |
1969443 |
T |
|
| Q |
318 |
agactctttctcaattagcactcaagtggag |
348 |
Q |
| |
|
| ||| |||||||| |||||||||||||||| |
|
|
| T |
1969444 |
aaactatttctcaaatagcactcaagtggag |
1969474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 2436927 - 2437268
Alignment:
| Q |
1 |
ccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcacatggcctcta |
100 |
Q |
| |
|
|||| ||||||| ||||||||||| ||||||| ||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2436927 |
ccttagtcacagatcagttggtggtttcttgagtcactgtggctggaattcaacccttgagagtgtggtgcatggtgtgccactaatcacatggcctctt |
2437026 |
T |
|
| Q |
101 |
tttgctgagcagagaacgaatgcggttttgttgagtgaaggcctaaaagtgggactgaggccaagagttaacgagaatggcattgtggaaagggtagaaa |
200 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||| | || ||||||||||||||||||||||| |
|
|
| T |
2437027 |
tttgccgagcagagaacgaattcggttttgttgagtgagggactaaaagtgggactgaggccaagagttcatgaaaatggcattgtggaaagggtagagg |
2437126 |
T |
|
| Q |
201 |
ttgctgagttgatcaagtgtctcatggaaggggaagaaggtgggaaactgcgtaataatatgaaggaatttaaagaagctgctagtagtgtacataaaga |
300 |
Q |
| |
|
||||| || |||||||||||||||||||||| |||||| ||| | | | ||||||||| ||| | |||||||||||| || || || ||||| |
|
|
| T |
2437127 |
ttgctaaggtgatcaagtgtctcatggaaggagaagaa----ctaaa--gtggagtaatatgaaagaactaaaagaagctgcttctaatgcactcaaaga |
2437220 |
T |
|
| Q |
301 |
agatggttctactacaaagactctttctcaattagcactcaagtggag |
348 |
Q |
| |
|
|||||||||| | ||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
2437221 |
agatggttcttcgacaaagactatttctcaattaacactcaagtggag |
2437268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 14 - 368
Target Start/End: Complemental strand, 2007881 - 2007528
Alignment:
| Q |
14 |
tcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcacatggcctctatttgctgagcaga |
113 |
Q |
| |
|
|||||||||||||||||||| || ||||| ||||||||||| |||||||||||| |||| |||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
2007881 |
tcagttggtgggttcttgacgcattgtggctggaattcaacccttgagagtgtggtgcacggtgtgccgttaatcacgtggcctctatttgctgagcaga |
2007782 |
T |
|
| Q |
114 |
gaacgaatgcggttttgttgagtgaaggcctaaaagtgggactgaggccaagagttaacgagaatggcattgtggaaagggtagaaattgctgagttgat |
213 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||||||||||||||| |||| ||||| || |||||||| |||||||||||||| ||||| || |||| |
|
|
| T |
2007781 |
aaatgaatgcggttttgttgagtgaaggactaaaagtgggactgagggcaagtgttaatgaaaatggcatagtggaaagggtagaggttgctaaggtgat |
2007682 |
T |
|
| Q |
214 |
caagtgtctcatggaaggggaagaaggtgggaaactgcgtaataatatgaaggaatttaaagaagctgctagtagtgtacataaagaagatggttctact |
313 |
Q |
| |
|
||||| |||||||||||| || || |||| |||| | || ||||| ||||||||||| |||||||||||| | || | ||||||||||||||| || |
|
|
| T |
2007681 |
caagtatctcatggaaggagacgagggtgagaaattacgcaataacatgaaggaattaaaagaagctgcttcaaatgcagtcaaagaagatggttcttct |
2007582 |
T |
|
| Q |
314 |
acaaagactctttctcaattagcactcaagtggagtaactttggtatagaaaaac |
368 |
Q |
| |
|
||||| ||| |||||||| ||||||| |||||||| || |||||| ||||||||| |
|
|
| T |
2007581 |
acaaaaactatttctcaaatagcacttaagtggag-aaatttggtgtagaaaaac |
2007528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 2011509 - 2011162
Alignment:
| Q |
1 |
ccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcacatggcctcta |
100 |
Q |
| |
|
|||| |||| ||||||||||| |||||||||| |||||||||||||| ||||| ||||| |||||| | ||||| ||||||||||||||||||||| | |
|
|
| T |
2011509 |
ccttagtcatagttcagttggcgggttcttgagtcactgtggttggagctcaacacttgaaagtgtggttcatggggtgccactaatcacatggcctatg |
2011410 |
T |
|
| Q |
101 |
tttgctgagcagagaacgaatgcggttttgttgagtgaaggcctaaaagtgggactgaggccaagagttaacgagaatggcattgtggaaagggtagaaa |
200 |
Q |
| |
|
|||||||| ||| ||| |||||| |||||| ||| ||| ||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||| || |
|
|
| T |
2011409 |
tttgctgaacagggaatgaatgcagttttggtgactgagggccttaaagtgggactgaggccaagagttaacgaaaatggtattgtcgaaagggtggagg |
2011310 |
T |
|
| Q |
201 |
ttgctgagttgatcaagtgtctcatggaaggggaagaaggtgggaaactgcgtaataatatgaaggaatttaaagaagctgctagtagtgtacataaaga |
300 |
Q |
| |
|
||||| || |||||||| ||||||||||||| ||||| ||| |||| ||| ||||||||||||||||| ||||||| |||| || || || ||||| |
|
|
| T |
2011309 |
ttgctaaggtgatcaagcgtctcatggaaggagaagagtgtgagaaattgcacaataatatgaaggaattaaaagaagttgcttctaatgcactcaaaga |
2011210 |
T |
|
| Q |
301 |
agatggttctactacaaagactctttctcaattagcactcaagtggag |
348 |
Q |
| |
|
|||||| ||| ||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
2011209 |
agatggatcttctacaaagactatttctcaattaacactcaagtggag |
2011162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 1965185 - 1965532
Alignment:
| Q |
1 |
ccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcacatggcctcta |
100 |
Q |
| |
|
|||| |||| |||||| |||| |||||||||| ||||||||||||||| ||||| ||||| |||||| ||||||| ||||||||||||||||||||| | |
|
|
| T |
1965185 |
ccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgccactaatcacatggcctatg |
1965284 |
T |
|
| Q |
101 |
tttgctgagcagagaacgaatgcggttttgttgagtgaaggcctaaaagtgggactgaggccaagagttaacgagaatggcattgtggaaagggtagaaa |
200 |
Q |
| |
|
|||||||| ||| ||| |||||| |||||| ||| || ||||| |||||||||||||| |||||||||||||| || || ||||| |||||||| || |
|
|
| T |
1965285 |
tttgctgaacagggaatgaatgcagttttggtgactgggggccttaaagtgggactgagaccaagagttaacgaaaacggtattgtcgaaagggtggagg |
1965384 |
T |
|
| Q |
201 |
ttgctgagttgatcaagtgtctcatggaaggggaagaaggtgggaaactgcgtaataatatgaaggaatttaaagaagctgctagtagtgtacataaaga |
300 |
Q |
| |
|
||||| || |||||||||||||||||||||| ||||| ||| |||| ||| |||||||||||||| || |||| || |||| | || || ||||| |
|
|
| T |
1965385 |
ttgctaaggtgatcaagtgtctcatggaaggagaagagtgtgagaaattgcacaataatatgaaggagttaaaaggagttgcttccaatgcactcaaaga |
1965484 |
T |
|
| Q |
301 |
agatggttctactacaaagactctttctcaattagcactcaagtggag |
348 |
Q |
| |
|
|||||| ||| ||||||||||| | ||||||||| ||||||||||||| |
|
|
| T |
1965485 |
agatggatcttctacaaagactatatctcaattaacactcaagtggag |
1965532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 38 - 139
Target Start/End: Complemental strand, 10201912 - 10201811
Alignment:
| Q |
38 |
tgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcacatggcctctatttgctgagcagagaacgaatgcggttttgttgagtg |
137 |
Q |
| |
|
||||||||||||||||| |||||||||||| || |||||||||| | || ||||||| || | ||||||||| | | |||||| ||||| ||||||| |
|
|
| T |
10201912 |
tgtggttggaattcaactcttgagagtgtggtgaatggtgtgcctttgattgcatggccactctatgctgagcaaaagatgaatgctgttttattgagtg |
10201813 |
T |
|
| Q |
138 |
aa |
139 |
Q |
| |
|
|| |
|
|
| T |
10201812 |
aa |
10201811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 38 - 139
Target Start/End: Complemental strand, 10208985 - 10208884
Alignment:
| Q |
38 |
tgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcacatggcctctatttgctgagcagagaacgaatgcggttttgttgagtg |
137 |
Q |
| |
|
||||||||||||||||| |||||||||||| || |||||||||| | || ||||||| || | ||||||||| | | |||||| ||||| ||||||| |
|
|
| T |
10208985 |
tgtggttggaattcaactcttgagagtgtggtgaatggtgtgcctttgattgcatggccactctatgctgagcaaaagatgaatgctgttttattgagtg |
10208886 |
T |
|
| Q |
138 |
aa |
139 |
Q |
| |
|
|| |
|
|
| T |
10208885 |
aa |
10208884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 5906175 - 5906521
Alignment:
| Q |
1 |
ccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcacatggcctcta |
100 |
Q |
| |
|
|||| |||||| ||||||||||| ||||||| ||| |||||||||| ||||| |||||||| | | ||||||||||||||||||||||||||||||| |
|
|
| T |
5906175 |
ccttagtcacatatcagttggtggattcttgagtcattgtggttggagttcaatccttgagagcgcgatgcatggtgtgccactaatcacatggcctctg |
5906274 |
T |
|
| Q |
101 |
tttgctgagcagagaacgaatgcggttttgttgagtgaaggcctaaaagtgggactgaggccaagagttaacgagaatggcattgtggaaagggtagaaa |
200 |
Q |
| |
|
|||||||||||||||| |||||| || || ||||||| |||||||| |||||| |||||||||||||||| || |||||||||||||||||| |||| |
|
|
| T |
5906275 |
tttgctgagcagagaatgaatgcatttgtgctgagtgagggcctaaaggtgggagtgaggccaagagttaatgaaaatggcattgtggaaaggatagagg |
5906374 |
T |
|
| Q |
201 |
ttgctgagttgatcaagtgtctcatggaaggggaagaaggtgggaaactgcgtaataatatgaaggaatttaaagaagctgctagtagtgtacataaaga |
300 |
Q |
| |
|
|| || || ||||||||||||||||||||||||||||| ||| |||| |||| ||||||||||||||||| |||||||| |||| || || || | |||| |
|
|
| T |
5906375 |
tttctaaggtgatcaagtgtctcatggaaggggaagaatgtgagaaattgcgcaataatatgaaggaattgaaagaagcagctactaatgcacttcaaga |
5906474 |
T |
|
| Q |
301 |
agatggttctactacaaagactctttctcaattagcactcaagtgga |
347 |
Q |
| |
|
|||||| ||| ||| ||||||| ||||||||||||||| |||||||| |
|
|
| T |
5906475 |
agatgggtcttctagaaagactgtttctcaattagcacacaagtgga |
5906521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 6 - 348
Target Start/End: Original strand, 5902696 - 5903038
Alignment:
| Q |
6 |
gtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcacatggcctctatttgc |
105 |
Q |
| |
|
||||||| ||||||||||| ||||||| ||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||| | |||| |
|
|
| T |
5902696 |
gtcacagatcagttggtggattcttgagtcactgtggctggaattcaatccttgagagtgtgatgcatggtgtgccactaatcacatggcctttgtttgg |
5902795 |
T |
|
| Q |
106 |
tgagcagagaacgaatgcggttttgttgagtgaaggcctaaaagtgggactgaggccaagagttaacgagaatggcattgtggaaagggtagaaattgct |
205 |
Q |
| |
|
|||||| |||| |||||| ||| || ||||||| ||||| |||||||||||||||||||| ||||| || ||||||||||| ||||||| |||||| || |
|
|
| T |
5902796 |
tgagcaaagaatgaatgcagttgtgctgagtgagggccttaaagtgggactgaggccaagggttaatgataatggcattgttgaaagggaggaaatttct |
5902895 |
T |
|
| Q |
206 |
gagttgatcaagtgtctcatggaaggggaagaaggtgggaaactgcgtaataatatgaaggaatttaaagaagctgctagtagtgtacataaagaagatg |
305 |
Q |
| |
|
| ||||||||| ||||||||||||| |||||| ||| ||| |||| ||||||||||||||||| ||||||||| ||| || || | |||||||| | |
|
|
| T |
5902896 |
aaattgatcaagggtctcatggaaggagaagaatgtgagaatttgcgcaataatatgaaggaattaaaagaagcttctactaatgcgctcaaagaagacg |
5902995 |
T |
|
| Q |
306 |
gttctactacaaagactctttctcaattagcactcaagtggag |
348 |
Q |
| |
|
| ||| ||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
5902996 |
ggtcttctagaaagaccatttctcaattagcactcaagtggag |
5903038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 348
Target Start/End: Complemental strand, 5890659 - 5890607
Alignment:
| Q |
296 |
aaagaagatggttctactacaaagactctttctcaattagcactcaagtggag |
348 |
Q |
| |
|
||||||||||||||| ||||||| | | ||||||||||||||||||||||||| |
|
|
| T |
5890659 |
aaagaagatggttcttctacaaacattttttctcaattagcactcaagtggag |
5890607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 845067 - 845007
Alignment:
| Q |
6 |
gtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgt |
66 |
Q |
| |
|
|||| |||||| |||||||||| || ||||| ||||||||||||||||| ||||| ||||| |
|
|
| T |
845067 |
gtcatagttcaattggtgggtttttaactcattgtggttggaattcaacacttgaaagtgt |
845007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 870351 - 870291
Alignment:
| Q |
6 |
gtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgt |
66 |
Q |
| |
|
|||| |||||| |||||||||| || ||||| ||||||||||||||||| ||||| ||||| |
|
|
| T |
870351 |
gtcatagttcaattggtgggtttttaactcattgtggttggaattcaacacttgaaagtgt |
870291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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