View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4268_high_7 (Length: 378)
Name: NF4268_high_7
Description: NF4268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4268_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 45091946 - 45092316
Alignment:
| Q |
1 |
tgttaggaaattaactctagctgcgtgataaaatctgcaactcgaaaaacaaatgtgaannnnnnnn-cccgggcaaaatctcaatctaatttcctactg |
99 |
Q |
| |
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|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
45091946 |
tgttaggagattaactctagctgcgtgataaaatgtgcaactcgaaaaacaaatgtgaatttttttttcccgggcaaaatctcaatctaatttcctactg |
45092045 |
T |
|
| Q |
100 |
ttaattttactgcgtttgaaacctgacagacaatgttcatggttgttgtccttgggcccttcagatctggct---------------tctgctgtttgtt |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
45092046 |
ttaattttactgcgtttgaaacctgacagacaatgttcatggttgttgtccttgggcccttcagatctggctaattttactctagcttctgctgtttgtt |
45092145 |
T |
|
| Q |
185 |
tattttctagtttatgtctttgttttgtctggtttaaggctgcactcttgttgtttgacaaaaagctccaaaagggttatgtcttttggaacaaagtagc |
284 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
45092146 |
tattttttagtttatgtctttgttttgtctggtttaaggctgcactcttgttgtttgacaaaaagccccaaaagggttatgtcttttggaacaaagtagc |
45092245 |
T |
|
| Q |
285 |
cagtgtatgttggcaatccatagtgactaaggaagcttacgaggctgactcccattgcaacaacttcttta |
355 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45092246 |
cattgtatgttggcaatccatagtgactaaggaagcttacgaggctgactcccattgcaacaacttcttta |
45092316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 142 - 355
Target Start/End: Original strand, 24375849 - 24376062
Alignment:
| Q |
142 |
ttgttgtccttgggcccttcagatctggcttctgctgtttgtttattttctagtttatgtctttgttttgtctggtttaaggctgcactcttgttgtttg |
241 |
Q |
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| T |
24375849 |
ttgttgtccttgggcccttcagacctggcttctgttgtttgtttattttctagtttatgtctttgttttgtctggtttaaggctgcactcttgttgtttg |
24375948 |
T |
|
| Q |
242 |
acaaaaagctccaaaagggttatgtcttttggaacaaagtagccagtgtatgttggcaatccatagtgactaaggaagcttacgaggctgactcccattg |
341 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24375949 |
acaaaaagccccaaaagggttatgtcttttggaacaaagtagccagtgcatgttggcaatccatagtgactaaggaagcttacgaggctgactcccattg |
24376048 |
T |
|
| Q |
342 |
caacaacttcttta |
355 |
Q |
| |
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|||||||||||||| |
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|
| T |
24376049 |
caacaacttcttta |
24376062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 142 - 355
Target Start/End: Original strand, 21781169 - 21781382
Alignment:
| Q |
142 |
ttgttgtccttgggcccttcagatctggcttctgctgtttgtttattttctagtttatgtctttgttttgtctggtttaaggctgcactcttgttgtttg |
241 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21781169 |
ttgttgtccttgggcccttcagatatggcttctgctgtttgtttattttatagtttatgtctttgttttgtctggtttaaggctgcactcttgttgtttg |
21781268 |
T |
|
| Q |
242 |
acaaaaagctccaaaagggttatgtcttttggaacaaagtagccagtgtatgttggcaatccatagtgactaaggaagcttacgaggctgactcccattg |
341 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||| |
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| T |
21781269 |
acaaaaagccccaaaagagttatgtcttttggaacaaagtagccagtgtatgttggcaatccatagtgactagggaaacttacgaggctgacttccattg |
21781368 |
T |
|
| Q |
342 |
caacaacttcttta |
355 |
Q |
| |
|
||||||| |||||| |
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|
| T |
21781369 |
caacaacctcttta |
21781382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 148 - 355
Target Start/End: Complemental strand, 9106259 - 9106052
Alignment:
| Q |
148 |
tccttgggcccttcagatctggcttctgctgtttgtttattttctagtttatgtctttgttttgtctggtttaaggctgcactcttgttgtttgacaaaa |
247 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| ||| |||||||| |||| | |||||||||||||||| |
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|
| T |
9106259 |
tccttgggcccttcagatatggcttctgctgtttgtttatgttctagtttatgtctctgttttttctagtttaaggatgcatttttgttgtttgacaaaa |
9106160 |
T |
|
| Q |
248 |
agctccaaaagggttatgtcttttggaacaaagtagccagtgtatgttggcaatccatagtgactaaggaagcttacgaggctgactcccattgcaacaa |
347 |
Q |
| |
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| | ||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
9106159 |
atccccaaaagggttatgtcttttggaacaaagtagccaatgtatgttggcaacccatttatactaagaaagcttacgaggctgactcccattgcaacaa |
9106060 |
T |
|
| Q |
348 |
cttcttta |
355 |
Q |
| |
|
|||||||| |
|
|
| T |
9106059 |
cttcttta |
9106052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 145 - 347
Target Start/End: Complemental strand, 11789024 - 11788822
Alignment:
| Q |
145 |
ttgtccttgggcccttcagatctggcttctgctgtttgtttattttctagtttatgtctttgttttgtctggtttaaggctgcactcttgttgtttgaca |
244 |
Q |
| |
|
|||||||||||| |||||||| ||| |||||||||| |||| |||||||||||||||||||||| ||| ||||||| ||||| ||| |||||||||| |
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|
| T |
11789024 |
ttgtccttgggcgcttcagatatggtttctgctgttggttttatttctagtttatgtctttgtttatcctgttttaaggatgcacgctttttgtttgaca |
11788925 |
T |
|
| Q |
245 |
aaaagctccaaaagggttatgtcttttggaacaaagtagccagtgtatgttggcaatccatagtgactaaggaagcttacgaggctgactcccattgcaa |
344 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| | |||||||||| |
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|
| T |
11788924 |
aaaagacccaagagggttatgtcttttggaacaaagtagccagtgtatgttggcaatccatagagactaaggaagcttccgaggctggcccccattgcaa |
11788825 |
T |
|
| Q |
345 |
caa |
347 |
Q |
| |
|
||| |
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|
| T |
11788824 |
caa |
11788822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 212 - 288
Target Start/End: Complemental strand, 32021370 - 32021294
Alignment:
| Q |
212 |
tctggtttaaggctgcactcttgttgtttgacaaaaagctccaaaagggttatgtcttttggaacaaagtagccagt |
288 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| |
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|
| T |
32021370 |
tctggtttaaggctgcactctagttgtttgacaaaaagcaccatgagggttatgtcttttggaacaaagtatccagt |
32021294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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