View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4268_high_9 (Length: 368)
Name: NF4268_high_9
Description: NF4268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4268_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 15 - 351
Target Start/End: Complemental strand, 48936515 - 48936177
Alignment:
| Q |
15 |
atttcttataccatctttttatcaatcgtaaggaatcattcgtcgtttatctgtggaaacaccttagtaagggggtatgttgagaggtaacaccaaaata |
114 |
Q |
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| T |
48936515 |
atttcttataccatcattttatcaatcgtaaggaatcattcgtcgtttatctgtggaaacaccttagaaagggggtatgttgagaggtaacaccaaaata |
48936416 |
T |
|
| Q |
115 |
ggataaatcagttagttagaacttttcatttgcttctgttaatagtaatgctgataatttattagcttttgggtttctaatcatcagctt--tgtttacg |
212 |
Q |
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| T |
48936415 |
ggataaatcagttagctagaacttttcatttgcttctgttaatagtaatgctgataatttattagcttttgggtttctaatcatcagctttatgtttacg |
48936316 |
T |
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| Q |
213 |
cgattatatcacaagtataaatgtaatttatctccaatgaataatacaatctgataatgtagtcaataaaattgttttggtggtgctgacagaggtaaaa |
312 |
Q |
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| T |
48936315 |
cgattatatcacaagtataaatgtaatctatctccaatgaataatacaatctgaaaatgtagtcaataaaattgttttggtggtgctgacagaggtaaaa |
48936216 |
T |
|
| Q |
313 |
atagtcagaatgcatttatcatgttctattataattatg |
351 |
Q |
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| T |
48936215 |
atagtcagaatgcatttatcatgttctattataattatg |
48936177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 247 - 356
Target Start/End: Original strand, 36969366 - 36969480
Alignment:
| Q |
247 |
caatgaataatacaatctgataatgtagtcaataaaattgttttggtggtgctgacagaggta-----aaaatagtcagaatgcatttatcatgttctat |
341 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||| | ||||||| ||||||| |
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| T |
36969366 |
caatgaataatacaatctgataatgtagtcaataaaattgttttggtggtgctgaaagaagtaaaaataaaatagtcagaattcctttatcaggttctat |
36969465 |
T |
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| Q |
342 |
tataattatgttgat |
356 |
Q |
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| T |
36969466 |
tataattatgttgat |
36969480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 247 - 315
Target Start/End: Complemental strand, 47109067 - 47108999
Alignment:
| Q |
247 |
caatgaataatacaatctgataatgtagtcaataaaattgttttggtggtgctgacagaggtaaaaata |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
47109067 |
caatgaataatacaatctgataatgtagtcaataaaattgttttggtggtgctgaaagatgtaaaaata |
47108999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 282
Target Start/End: Original strand, 47109474 - 47109508
Alignment:
| Q |
248 |
aatgaataatacaatctgataatgtagtcaataaa |
282 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
47109474 |
aatgaataatacaatctgataatgtagtcaataaa |
47109508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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