View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4268_low_11 (Length: 338)
Name: NF4268_low_11
Description: NF4268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4268_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 4010789 - 4011078
Alignment:
| Q |
1 |
ctgtcggcactactataaacttattttgttagaagtttgtactgagaggtttaatacccattataaaacatttctttttctttctcttttcctccctcct |
100 |
Q |
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| T |
4010789 |
ctgtcggcactactataaacttattttgttagaagtttgtatcgagaggtttaatacccattataaaacatttctttttctttctcttttccttcctcct |
4010888 |
T |
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| Q |
101 |
tagtaggatcaagggttaaaaatgtgttgttgcctgcatgtttcgtttatagaagttgtcaacaaaccattactaatttatagactacattggcccaaat |
200 |
Q |
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| T |
4010889 |
tagtagtatcaagggttaaaaatgtgttgttgcctgcatgttttgtctatagaagttgtcaacaaaccattactaatttatagactacattggcccaaat |
4010988 |
T |
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| Q |
201 |
taaatacacataatcacaatcaagtcattcttgtgttagtgaatccaaggtatgactgatcagaaatcagagcctaattcctcaaagtac |
290 |
Q |
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| T |
4010989 |
taaatacacataatcacaatcaagacattctttttttagtaaatccaaggtatgactggtcggaaatcagagcctaattcctcaaagtac |
4011078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 322
Target Start/End: Original strand, 4011155 - 4011187
Alignment:
| Q |
290 |
cggaaataaaatttcccttccaaggatccttgt |
322 |
Q |
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| T |
4011155 |
cggaaataaaatttcccttccaaggatccttgt |
4011187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 165
Target Start/End: Complemental strand, 3953934 - 3953855
Alignment:
| Q |
86 |
cttttcctccctccttagtaggatcaagggttaaaaatgtgttgttgcctgcatgtttcgtttatagaagttgtcaacaa |
165 |
Q |
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| T |
3953934 |
ctttcccttcctccttagtaggatcacgggttcaaagtttgatgttgcctacatttttcgtctatagaagctttcaacaa |
3953855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 167
Target Start/End: Original strand, 4025853 - 4025935
Alignment:
| Q |
85 |
tcttttcctccctccttagtaggatcaagggttaaaaatgtgttgttgcctgcatgtttcgtttatagaagttgtcaacaaac |
167 |
Q |
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| T |
4025853 |
tctttcccttcctccttagtaagatcaaggactaaaaatgtgatgtgtcctacatctttcgtctatagaagctgccaacaaac |
4025935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 13398572 - 13398625
Alignment:
| Q |
182 |
agactacattggcccaaattaaatacac-ataatcacaatcaagtcattcttgt |
234 |
Q |
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| T |
13398572 |
agactacattggcccaaattaaaaccacaataatcacaatcaagccatttttgt |
13398625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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