View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4268_low_13 (Length: 315)
Name: NF4268_low_13
Description: NF4268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4268_low_13 |
 | |
|
| [»] scaffold0658 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 12 - 301
Target Start/End: Original strand, 5053753 - 5054041
Alignment:
| Q |
12 |
atcatcattaaggggtcaagagacaaaatttgtataaataattagcagacattcaccaagtgttttcaaatcaaatttggataaataaattaattaagtc |
111 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5053753 |
atcatcattaaggggtcaaga--caaaaactgtataaataattagcagacattcaccaagtgtttccaaatcaaatttggataaataaattaattaagtc |
5053850 |
T |
|
| Q |
112 |
aaaccctttatgcataaaacttcaccttttatttggccatatcaatc-taaataattaaatagaaacataaataattgtttaattgttatgcctaactaa |
210 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5053851 |
aaaccctttaagcataaaacttcaccttttatttggccatatcaatcgtaaataattaaatagaaacataaataattgtttaattgttatgcctaactaa |
5053950 |
T |
|
| Q |
211 |
gacaaatataagtaataccaggaaatctagctatgtcggagtacttggaaatgaaactaaactgttaacgtgaggccatacctcaaaattg |
301 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5053951 |
gacaaatataagtaataccaggaaacctagctatgtcggagtacttggaaatgaaactaaactgttgacgtgaggccatacctcaaaattg |
5054041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 9860956 - 9860895
Alignment:
| Q |
238 |
tagctatgtcggagtacttggaaatgaaactaaactgttaacgtgaggccatacctcaaaat |
299 |
Q |
| |
|
|||||||| ||||||| ||| ||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
9860956 |
tagctatgctggagtacatggcaatgaaactaaactgttaatgtgagaccatacctcaaaat |
9860895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 27361459 - 27361397
Alignment:
| Q |
126 |
taaaacttcaccttttatttggccat-atcaatcta---aataattaaatagaaacataaata |
184 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
27361459 |
taaaacttcaccttttgtttggccatggtcaatctagatgataattaaatagaaacataaata |
27361397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 299
Target Start/End: Complemental strand, 39576687 - 39576625
Alignment:
| Q |
237 |
ctagctatgtcggagtacttggaaatgaaactaaactgttaacgtgaggccatacctcaaaat |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||| |||| ||||||| ||||||| |
|
|
| T |
39576687 |
ctagctatgtcggagtacttggaaatgaaaaaagactgttagtgtgaagccatacttcaaaat |
39576625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0658 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0658
Description:
Target: scaffold0658; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 2438 - 2500
Alignment:
| Q |
126 |
taaaacttcaccttttatttggccat-atcaatcta---aataattaaatagaaacataaata |
184 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
2438 |
taaaacttcaccttttgtttggccatggtcaatctagatgataattaaatagaaacataaata |
2500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 112355 - 112395
Alignment:
| Q |
229 |
caggaaatctagctatgtcggagtacttggaaatgaaacta |
269 |
Q |
| |
|
||||||| |||||||||| ||||||||||| |||||||||| |
|
|
| T |
112355 |
caggaaacctagctatgttggagtacttggcaatgaaacta |
112395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University