View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4268_low_18 (Length: 281)
Name: NF4268_low_18
Description: NF4268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4268_low_18 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 5 - 281
Target Start/End: Original strand, 28094672 - 28094948
Alignment:
| Q |
5 |
atcatcttggtgaaccaagtactcgcctaagttttcttcgaggtacttgtcgaattcgggtggatcattgtgaccaaactcagttctaacctcgaggatt |
104 |
Q |
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| T |
28094672 |
atcatcttggtgaaccaagtactcgcctaagttttcttcgaggtacttgtcgaattcgggtggatcattgtgaccaaactcagttctaacctcgaggatt |
28094771 |
T |
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| Q |
105 |
atgatttcggatacggtttctgataagaacttttttatgtcttttatgacaacgtctacgctgtacgtgaggagaattccgtgacatactcttcgatcct |
204 |
Q |
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| T |
28094772 |
atgatttcggatacggtttctgataagaacttttttatgtcttttatgacaacgtctacgctgtacgtgaggagaattccgtgacatactcttcgatcct |
28094871 |
T |
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| Q |
205 |
cttgcacgcgaatgtcgaacactcgtgttcctcttacaagctgattatagatggatatggtttggcattgtgcgaaa |
281 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28094872 |
cttgcacgcgaatgtcgaacacccgtgttcctcttacaagctgattatagatggataaggtttggcattgtgcgaaa |
28094948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 106
Target Start/End: Complemental strand, 26156085 - 26155984
Alignment:
| Q |
5 |
atcatcttggtgaaccaagtactcgcctaagttttcttcgaggtacttgtcgaattcgggtggatcattgtgaccaaactcagttctaacctcgaggatt |
104 |
Q |
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||||||||| |||| ||| |||| ||||| | |||||| || ||||| || ||||| |||||||||| |||||||| || ||||||||||| || ||| |
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| T |
26156085 |
atcatcttgatgaatcaaaaactcacctaattgttcttccagatacttatcaaattcaggtggatcatcatgaccaaattctgttctaacctcaagaatt |
26155986 |
T |
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| Q |
105 |
at |
106 |
Q |
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|| |
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| T |
26155985 |
at |
26155984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 106
Target Start/End: Complemental strand, 26169383 - 26169282
Alignment:
| Q |
5 |
atcatcttggtgaaccaagtactcgcctaagttttcttcgaggtacttgtcgaattcgggtggatcattgtgaccaaactcagttctaacctcgaggatt |
104 |
Q |
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||||||||| |||| ||| |||| ||||| | |||||| || ||||| || ||||| |||||||||| |||||||| || ||||||||||| || ||| |
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| T |
26169383 |
atcatcttgatgaatcaaaaactcacctaattgttcttccagatacttatcaaattcaggtggatcatcatgaccaaattctgttctaacctcaagaatt |
26169284 |
T |
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| Q |
105 |
at |
106 |
Q |
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|| |
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| T |
26169283 |
at |
26169282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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