View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4268_low_2 (Length: 765)

Name: NF4268_low_2
Description: NF4268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4268_low_2
NF4268_low_2
[»] chr5 (2 HSPs)
chr5 (390-746)||(12870155-12870511)
chr5 (390-532)||(43469538-43469680)
[»] chr6 (1 HSPs)
chr6 (389-746)||(27765317-27765674)
[»] chr2 (9 HSPs)
chr2 (131-391)||(30673490-30673746)
chr2 (131-391)||(30664813-30665070)
chr2 (13-120)||(30622361-30622468)
chr2 (13-120)||(30624982-30625089)
chr2 (13-120)||(30668112-30668219)
chr2 (48-120)||(30665691-30665763)
chr2 (390-512)||(3081203-3081325)
chr2 (137-253)||(30676254-30676366)
chr2 (390-474)||(10983146-10983228)
[»] chr7 (1 HSPs)
chr7 (390-532)||(10646041-10646183)
[»] chr1 (4 HSPs)
chr1 (390-532)||(46566569-46566711)
chr1 (389-532)||(12606569-12606712)
chr1 (388-512)||(49195411-49195535)
chr1 (389-512)||(40908315-40908438)
[»] chr4 (4 HSPs)
chr4 (390-532)||(23538151-23538293)
chr4 (390-512)||(31525455-31525577)
chr4 (381-443)||(26629177-26629239)
chr4 (381-443)||(26629366-26629428)
[»] chr3 (1 HSPs)
chr3 (389-512)||(33365924-33366047)
[»] scaffold0238 (2 HSPs)
scaffold0238 (486-532)||(5337-5383)
scaffold0238 (390-479)||(5100-5189)


Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 390 - 746
Target Start/End: Original strand, 12870155 - 12870511
Alignment:
Q  390 atcctttattattaaagccagatttgatgagctagcagtgttgccctaatcacttctgtttttctcttcctaatccgtaattaatgctaatttcaactgc 489  Q
    |||||||| ||| ||||||||| |||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||  |    
T  12870155 atcctttactataaaagccagacttgatgagctggcagtgttgccctaatcacttctgtttttccctccctaatccgtaattaatgctaacttcaacaac 12870254  T
Q  490 caaccacaccctaaatctcagcctttgatctgatgaccgttcaaatttgcattaagtgatgaccctatctgccaactacccactaatgaaccttcaatgt 589  Q
    |||||||||||||||||||||||||||||||||||||  |||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  12870255 caaccacaccctaaatctcagcctttgatctgatgacttttcaagcttgcattaagtgctgaccctatctgccaactacccactaatgaaccttcaatgt 12870354  T
Q  590 ccattcagttttcaaatgaatttgtatcacccgaggcgtctctctatctccccaatctctcaacttttttgctattcccattcactcttatgttttcaat 689  Q
    |||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12870355 ccattcagttttcaaatgaattcgtattacccgaggtgtctctctatctccccaatctctcaacttttttgctattcccattcactcttatgttttcaat 12870454  T
Q  690 gccaaactctttcctcctctaactccttcttctttctgagaaagcgatgaagtacct 746  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  12870455 gccaaactctttcctcctctaactccttcttttttctgagagagcgatgaagtacct 12870511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 390 - 532
Target Start/End: Complemental strand, 43469680 - 43469538
Alignment:
Q  390 atcctttattattaaagccagatttgatgagctagcagtgttgccctaatcacttctgtttttctcttcctaatccgtaattaatgctaatttcaactgc 489  Q
    |||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||  ||||| || || ||||||||||||||| |||||||| ||||    
T  43469680 atcctttattataaaagccagacttgatgagctggcagtgttgccctaatcacttcttattttccctcccaaatccgtaattaatgttaatttcatctgc 43469581  T
Q  490 caaccacaccctaaatctcagcctttgatctgatgaccgttca 532  Q
    |||||||||||||||||||||||||||||| || |||| ||||    
T  43469580 caaccacaccctaaatctcagcctttgatcggaagacctttca 43469538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 389 - 746
Target Start/End: Original strand, 27765317 - 27765674
Alignment:
Q  389 tatcctttattattaaagccagatttgatgagctagcagtgttgccctaatcacttctgtttttctcttcctaatccgtaattaatgctaatttcaactg 488  Q
    ||||||||||||||||||| ||| |||||||||| |      |||||||||||||| |||||||| || |||||||| |||||||||||||| |||||||    
T  27765317 tatcctttattattaaagctagacttgatgagctgg------tgccctaatcacttttgtttttccctccctaatccataattaatgctaatctcaactg 27765410  T
Q  489 ccaaccacaccctaaatctcagcctttgatctgatgaccgttcaaatttgcattaagtgatgaccctatctgccaactacccactaa------tgaacct 582  Q
    ||||||||||| ||||||| || |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||      |||||||    
T  27765411 ccaaccacaccataaatcttagtctttgatctgatgacctttcaaatttgcattaagtgctgaccctatctgccaactacccactaacaccaatgaacct 27765510  T
Q  583 tcaatgtccattcagttttcaaatgaatttgtatcacccgaggcgtctctctatctccccaatctctcaacttttttgctattcccattcactcttatgt 682  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27765511 tcaatgtccattcagttttcaaatgaatttgtattacccgaggtgtctctctatctccccaatctctcaacttttttgctattcccattcactcttatgt 27765610  T
Q  683 tttcaatgccaaactctttcctcctctaactccttcttctttctgagaaagcgatgaagtacct 746  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27765611 tttcaatgccaaactctttcctcctctaactccttcttctttctgagagagcgatgaagtacct 27765674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 175; Significance: 8e-94; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 131 - 391
Target Start/End: Complemental strand, 30673746 - 30673490
Alignment:
Q  131 tttgtgacatgcctttatttgtgttgtttacatagcatgatttgaacgttacaccaacctatgatagtgagtgtgggccttagtactgttctgatccaat 230  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||| |  || ||||| |||||||||||||||||||   |||||||||||||||    
T  30673746 tttgtaacatgcctttatttgtgttgtttacatagcaggatttgaacgttgctgca-cctataatagtgagtgtgggcctta---ctgttctgatccaat 30673651  T
Q  231 atatgggatgtgttgggtcaataatgtagatgcttatttataagtttttgagggatggtaagagctaagtttgatgtgatagcttttcttggcaattact 330  Q
    |||||||||||| |||||||||||||||||||| |||| |||||||||||||||| | |||||||||| || ||||||||||||||||||||| ||||||    
T  30673650 atatgggatgtgctgggtcaataatgtagatgcgtattcataagtttttgagggaagttaagagctaacttggatgtgatagcttttcttggcgattact 30673551  T
Q  331 atgggatgggataggggttttaccgaccaaaatttgtttatgaaaaatatttttattttat 391  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  30673550 atgggatgggatagggtttttacccaccaaaatttgtttatgaaaaatatttttattttat 30673490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 131 - 391
Target Start/End: Complemental strand, 30665070 - 30664813
Alignment:
Q  131 tttgtgacatgcctttatttgtgttgtttacatagcatgatttgaacgttacaccaacctatgatagtgagtgtgggccttagtactgttctgatccaat 230  Q
    ||||| |||||||||||||||||||||||| || ||| ||||||||||||||  || ||||||||||||||| |||||||||   |||||||||||||||    
T  30665070 tttgtaacatgcctttatttgtgttgtttatatcgcaggatttgaacgttactgca-cctatgatagtgagtctgggcctta---ctgttctgatccaat 30664975  T
Q  231 atatgggatgtgttgggtcaataa-tgtagatgcttatttataagtttttgagggatggtaagagctaagtttgatgtgatagcttttcttggcaattac 329  Q
    |||||||||||| ||||||||||| ||||||||| |||| |||||||||| ||||| | |||||||||| || ||||||||||||||||||||| |||||    
T  30664974 atatgggatgtgctgggtcaataaatgtagatgcgtattcataagttttttagggaagttaagagctaacttggatgtgatagcttttcttggcgattac 30664875  T
Q  330 tatgggatgggataggggttttaccgaccaaaatttgtttatgaaaaatatttttattttat 391  Q
    ||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||    
T  30664874 tatgggatgggatagggtttttacccaccaaaatttgttcatgaaaaatatttttattttat 30664813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 30622468 - 30622361
Alignment:
Q  13 tactatcaaggtgaccttctatgatttttggcttctatctatgaggagatataattcttgcagaggataattgataaagattgatattagggaaaccacc 112  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30622468 tactatcaaggtgaccttctatgatttttggcttctatcaatgaggacatataattcttgcagaggataattgataaagattgaaattagggaaaccacc 30622369  T
Q  113 attctcat 120  Q
    ||| ||||    
T  30622368 attgtcat 30622361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 30625089 - 30624982
Alignment:
Q  13 tactatcaaggtgaccttctatgatttttggcttctatctatgaggagatataattcttgcagaggataattgataaagattgatattagggaaaccacc 112  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30625089 tactatcaaggtgaccttctatgatttttggcttctatcaatgaggacatataattcttgcagaggataattgataaagattgaaattagggaaaccacc 30624990  T
Q  113 attctcat 120  Q
    ||| ||||    
T  30624989 attgtcat 30624982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 30668219 - 30668112
Alignment:
Q  13 tactatcaaggtgaccttctatgatttttggcttctatctatgaggagatataattcttgcagaggataattgataaagattgatattagggaaaccacc 112  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30668219 tactatcaaggcgaccttctatgatttttggcttctatcaatgaggagatataattcttgcagaggataattgataaagattgaaattagggaaaccacc 30668120  T
Q  113 attctcat 120  Q
    ||| ||||    
T  30668119 attgtcat 30668112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 48 - 120
Target Start/End: Complemental strand, 30665763 - 30665691
Alignment:
Q  48 tatctatgaggagatataattcttgcagaggataattgataaagattgatattagggaaaccaccattctcat 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  30665763 tatctatgaggagatataattcttgcagaggataattgataaagattgaaattagggaaaccaccattgtcat 30665691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 390 - 512
Target Start/End: Original strand, 3081203 - 3081325
Alignment:
Q  390 atcctttattattaaagccagatttgatgagctagcagtgttgccctaatcacttctgtttttctcttcctaatccgtaattaatgctaatttcaactgc 489  Q
    |||||||| ||||||||||||| |||||||||| ||||||||||||||||||   ||  ||||| || |||||  || | |||||| |||| ||| ||||    
T  3081203 atcctttactattaaagccagacttgatgagctggcagtgttgccctaatcatccctcattttccctccctaacacgcatttaatgttaatctcatctgc 3081302  T
Q  490 caaccacaccctaaatctcagcc 512  Q
    ||| |||||  ||||||||||||    
T  3081303 caatcacacattaaatctcagcc 3081325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 253
Target Start/End: Complemental strand, 30676366 - 30676254
Alignment:
Q  137 acatgcctttatttgtgttgtttacatagcatgatttgaacgttacaccaacctatgatagtgagtgtgggccttagtactgttctgatccaatatatgg 236  Q
    ||||||||||||||||||||||||||| ||| |||||||| |||||  | || | |||||||||||||| | ||   |||||||| ||||||| |||||     
T  30676366 acatgcctttatttgtgttgtttacatcgcaggatttgaaagttactgc-acttctgatagtgagtgtgagtct---tactgttcagatccaaaatatgc 30676271  T
Q  237 gatgtgttgggtcaata 253  Q
    |||||| | ||||||||    
T  30676270 gatgtgcttggtcaata 30676254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 390 - 474
Target Start/End: Complemental strand, 10983228 - 10983146
Alignment:
Q  390 atcctttattattaaagccagatttgatgagctagcagtgttgccctaatcacttctgtttttctcttcctaatccgtaattaat 474  Q
    |||||||||||| ||||||||| |||||||||| ||||| |||||||||||| | ||| ||||| | ||||||| ||| ||||||    
T  10983228 atcctttattataaaagccagacttgatgagctggcagt-ttgccctaatcaatcctgattttc-cctcctaattcgtcattaat 10983146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 4e-46; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 390 - 532
Target Start/End: Complemental strand, 10646183 - 10646041
Alignment:
Q  390 atcctttattattaaagccagatttgatgagctagcagtgttgccctaatcacttctgtttttctcttcctaatccgtaattaatgctaatttcaactgc 489  Q
    |||||||||| | ||||||||| |||||||||| |||||||||||||||||||||||  ||||| || || |||||||||||||||||||| ||| ||||    
T  10646183 atcctttattctaaaagccagacttgatgagctggcagtgttgccctaatcacttcttattttccctcccaaatccgtaattaatgctaatctcatctgc 10646084  T
Q  490 caaccacaccctaaatctcagcctttgatctgatgaccgttca 532  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  10646083 caaccacaccctaaatctcagcctttgatctgatgaccattca 10646041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 1e-43; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 390 - 532
Target Start/End: Original strand, 46566569 - 46566711
Alignment:
Q  390 atcctttattattaaagccagatttgatgagctagcagtgttgccctaatcacttctgtttttctcttcctaatccgtaattaatgctaatttcaactgc 489  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||  ||||| || || |||  ||||||||||||||| ||| ||||    
T  46566569 atcctttattataaaagccagatttgatgagctggcagtgttgccctaatcacttcttattttccctcccaaatttgtaattaatgctaatctcatctgc 46566668  T
Q  490 caaccacaccctaaatctcagcctttgatctgatgaccgttca 532  Q
    |||||||| ||||||||||||||||||||||||||||| ||||    
T  46566669 caaccacatcctaaatctcagcctttgatctgatgacctttca 46566711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 389 - 532
Target Start/End: Complemental strand, 12606712 - 12606569
Alignment:
Q  389 tatcctttattattaaagccagatttgatgagctagcagtgttgccctaatcacttctgtttttctcttcctaatccgtaattaatgctaatttcaactg 488  Q
    ||||||||| ||| ||||||||| |||||| ||| |||||||||||||||||||| ||  ||||| || |||||||| ||||||||||||||  || |||    
T  12606712 tatcctttactataaaagccagacttgatgtgctggcagtgttgccctaatcactccttattttccctccctaatccataattaatgctaatcccatctg 12606613  T
Q  489 ccaaccacaccctaaatctcagcctttgatctgatgaccgttca 532  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  12606612 ccaaccacaccctaaatctcagcctttgatctgatgacctttca 12606569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 388 - 512
Target Start/End: Complemental strand, 49195535 - 49195411
Alignment:
Q  388 ttatcctttattattaaagccagatttgatgagctagcagtgttgccctaatcacttctgtttttctcttcctaatccgtaattaatgctaatttcaact 487  Q
    |||||||||||||| ||||||||| |||||||||| |||||||||||||||||||| ||||||||| || ||||||| |||||||||| |||| ||| ||    
T  49195535 ttatcctttattataaaagccagacttgatgagctggcagtgttgccctaatcactcctgtttttccctccctaatctgtaattaatgttaatctcatct 49195436  T
Q  488 gccaaccacaccctaaatctcagcc 512  Q
    ||||||||||| ||||||| |||||    
T  49195435 gccaaccacacactaaatcacagcc 49195411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 389 - 512
Target Start/End: Original strand, 40908315 - 40908438
Alignment:
Q  389 tatcctttattattaaagccagatttgatgagctagcagtgttgccctaatcacttctgtttttctcttcctaatccgtaattaatgctaatttcaactg 488  Q
    ||||||||| ||| ||||||||| |||||||||| ||||||||||||||||||   ||  ||||| || |||||   | | |||||| |||| ||| |||    
T  40908315 tatcctttactataaaagccagacttgatgagctggcagtgttgccctaatcatccctcattttccctccctaacatgaatttaatgttaatctcatctg 40908414  T
Q  489 ccaaccacaccctaaatctcagcc 512  Q
    ||||||||||  ||||||||||||    
T  40908415 ccaaccacacgttaaatctcagcc 40908438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 3e-41; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 390 - 532
Target Start/End: Complemental strand, 23538293 - 23538151
Alignment:
Q  390 atcctttattattaaagccagatttgatgagctagcagtgttgccctaatcacttctgtttttctcttcctaatccgtaattaatgctaatttcaactgc 489  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||  |  ||||  || ||||||| ||||||||||||||| ||| ||||    
T  23538293 atcctttattattaaagtcagacttgatgagctagcagtgttgccctaatcactcattatttttcctccctaatctgtaattaatgctaatctcatctgc 23538194  T
Q  490 caaccacaccctaaatctcagcctttgatctgatgaccgttca 532  Q
    ||||||||||||||||||| |||||||||||||||||| ||||    
T  23538193 caaccacaccctaaatctcggcctttgatctgatgacctttca 23538151  T

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Target: chr4; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 390 - 512
Target Start/End: Complemental strand, 31525577 - 31525455
Alignment:
Q  390 atcctttattattaaagccagatttgatgagctagcagtgttgccctaatcacttctgtttttctcttcctaatccgtaattaatgctaatttcaactgc 489  Q
    |||||||||||| ||||||||| |||||||||| |||||||||||||||||||| ||||||||| || ||||||| |||||||||| |||| ||||||||    
T  31525577 atcctttattataaaagccagacttgatgagctggcagtgttgccctaatcactcctgtttttccctccctaatctgtaattaatgttaatctcaactgc 31525478  T
Q  490 caaccacaccctaaatctcagcc 512  Q
    ||||||||| ||||||| |||||    
T  31525477 caaccacacactaaatcacagcc 31525455  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 381 - 443
Target Start/End: Complemental strand, 26629239 - 26629177
Alignment:
Q  381 ttttattttatcctttattattaaagccagatttgatgagctagcagtgttgccctaatcact 443  Q
    |||||||| |||||||||||| ||||| ||| ||||| ||||||||   ||||||||||||||    
T  26629239 ttttatttgatcctttattataaaagctagagttgattagctagcatgtttgccctaatcact 26629177  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 381 - 443
Target Start/End: Complemental strand, 26629428 - 26629366
Alignment:
Q  381 ttttattttatcctttattattaaagccagatttgatgagctagcagtgttgccctaatcact 443  Q
    |||||||| |||||||||||| ||||| ||| ||||| ||||||||   ||||||||||||||    
T  26629428 ttttatttgatcctttattataaaagctagagttgattagctagcatgtttgccctaatcact 26629366  T

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Target: chr3 (Bit Score: 76; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 389 - 512
Target Start/End: Original strand, 33365924 - 33366047
Alignment:
Q  389 tatcctttattattaaagccagatttgatgagctagcagtgttgccctaatcacttctgtttttctcttcctaatccgtaattaatgctaatttcaactg 488  Q
    ||||||||||||| ||||||||| |||||||||| |||||||||||||||||||| ||||||||| || |||||||  ||||||||| |||| |||||||    
T  33365924 tatcctttattataaaagccagacttgatgagctggcagtgttgccctaatcactcctgtttttccctccctaatctataattaatgttaatctcaactg 33366023  T
Q  489 ccaaccacaccctaaatctcagcc 512  Q
    |||||||||| ||||||| |||||    
T  33366024 ccaaccacacactaaatcacagcc 33366047  T

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Target: scaffold0238 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 486 - 532
Target Start/End: Original strand, 5337 - 5383
Alignment:
Q  486 ctgccaaccacaccctaaatctcagcctttgatctgatgaccgttca 532  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  5337 ctgccaaccacaccctaaatctcagcctttgatctgatgacctttca 5383  T

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Target: scaffold0238; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 390 - 479
Target Start/End: Original strand, 5100 - 5189
Alignment:
Q  390 atcctttattattaaagccagatttgatgagctagcagtgttgccctaatcacttctgtttttctcttcctaatccgtaattaatgctaa 479  Q
    |||||||| ||| |||||||||||||||| ||| ||||||||| |||||||||| ||  ||||  || | |||||| |||||||||||||    
T  5100 atcctttactataaaagccagatttgatgtgctggcagtgttgtcctaatcactccttatttttcctccttaatccataattaatgctaa 5189  T

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