View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4268_low_24 (Length: 236)
Name: NF4268_low_24
Description: NF4268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4268_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 6030855 - 6031078
Alignment:
| Q |
1 |
taacttttgacaatgaatgacatgttatgggcctagacctaagtatttagatttctcaaccgttaaattttctgctatcccacaatatattggtaattac |
100 |
Q |
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| T |
6030855 |
taacttttgacaatgaatgacatgttatgggcctagacctaagtatttagatttctcaaccgtcaaattttctgctatcccacaatatattggtaattac |
6030954 |
T |
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| Q |
101 |
atgtcttttacagtttttcaatctctcaaagcatccttcattccctctgcaattcttcaaacattcaggtgcttaatctttccattaataagatttatgg |
200 |
Q |
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| T |
6030955 |
atgtcttttacagtttttcaatctctcaaagcatccttcattccctctgcaatgcttcaaacattcaggtgcttaatctttccattaataagatttatgg |
6031054 |
T |
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| Q |
201 |
aacaataccgacatgtttactgat |
224 |
Q |
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| T |
6031055 |
aacaataccgacatgtttactgat |
6031078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 219
Target Start/End: Complemental strand, 5552459 - 5552384
Alignment:
| Q |
144 |
cctctgcaattcttcaaacattcaggtgcttaatctttccattaataagatttatggaacaataccgacatgttta |
219 |
Q |
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| T |
5552459 |
cctctgcaatgcttcaaatcttcaagtgcttgatctttccattaataaaatttctggaacaatgcccgcatgttta |
5552384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 5853910 - 5853991
Alignment:
| Q |
138 |
tcattccctctgcaattcttcaaacattcaggtgcttaatctttccattaataagatttatggaacaataccgacatgttta |
219 |
Q |
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| T |
5853910 |
tcatttcctctgcaatgcttcaaatcttcaagtacttgatctttccattaataaaatttttggaacaattcccgcatgttta |
5853991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 5540212 - 5540269
Alignment:
| Q |
133 |
atccttcattccctctgcaattcttcaaacattcaggtgcttaatctttccattaata |
190 |
Q |
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| T |
5540212 |
atccctcattccctctgcaatgcttcaaatcttcaagtgcttgatatttccattaata |
5540269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 5572075 - 5572148
Alignment:
| Q |
133 |
atccttcattccctctgcaattcttcaaacattcaggtgcttaatctttccattaataagatttatggaacaat |
206 |
Q |
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| T |
5572075 |
atccctcaatccctctgcaatgcttcaaatcttcaagtgcttgatatttccattaatagcatttctggaacaat |
5572148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 5895881 - 5895946
Alignment:
| Q |
42 |
agtatttagatttctcaaccgttaaattttctgctatcccacaatatattggtaattacatgtctt |
107 |
Q |
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| T |
5895881 |
agtatttggattactcaaccaataaattctctgttatcccacatgatattggtaattacttgtctt |
5895946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 5584291 - 5584355
Alignment:
| Q |
142 |
tccctctgcaattcttcaaacattcaggtgcttaatctttccattaataagatttatggaacaat |
206 |
Q |
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| T |
5584291 |
tccctctgcaatgcttcaaatcttcaagtgcttgatatttccattaatagcatttctggaacaat |
5584355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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