View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4268_low_25 (Length: 235)
Name: NF4268_low_25
Description: NF4268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4268_low_25 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 8 - 235
Target Start/End: Original strand, 46069320 - 46069548
Alignment:
| Q |
8 |
catcatcatctttcccaaaattttgaattaggattaatcttctttcccgaaatactcta-taatttgtaaaaattattatctgaatcttaaattcccact |
106 |
Q |
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| T |
46069320 |
catcatcatctttcccaaaattttgaattaggattgatcttcttccccgaaatactctaataatttgtaaaaattattatctgaatcttaaattcccact |
46069419 |
T |
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| Q |
107 |
tattacatctcattcattaatacttcaacctccaaatttcattctctccttttacatccttacaacatcatcttaccataaattaatggattcgatgaat |
206 |
Q |
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|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
46069420 |
tattacatctcattgattaatacttcaatctccaaatttcattctctccttttacatccttacaaaatcatcttaccataaattaatggattcgatgaat |
46069519 |
T |
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| Q |
207 |
ttttctcatttccaaacaaggagtcctac |
235 |
Q |
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| T |
46069520 |
ttttctcatttccaaacaaggagtcctac |
46069548 |
T |
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