View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4268_low_5 (Length: 493)
Name: NF4268_low_5
Description: NF4268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4268_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 477
Target Start/End: Complemental strand, 1003112 - 1002653
Alignment:
| Q |
18 |
tgtcatattgaaccaatgttggaaattatttagtttattatactaaagaaaacaaatttttacttacaatatgatgaccaaccattgcctcaaatgtcaa |
117 |
Q |
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| T |
1003112 |
tgtcatattgaaccaattttggaaattatttagtttattatactaaagaaaacaaattttaacttacaatatgatgaccaaccattgcctcaaatgtcaa |
1003013 |
T |
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| Q |
118 |
tgggttaaaagtgttcaatttcattctaagcttttttctttgtctcctaatctgagctatcaacggagcaaaatatgtggctctgttcacagtaataaaa |
217 |
Q |
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| T |
1003012 |
tgggttaaaactgttcaatttcatgttaagcttttttcttcgtctcctaatctgagctatcaacagagcaaaatatgtggctctgttcacagtaataaaa |
1002913 |
T |
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| Q |
218 |
atgtcatttgtccgaaaagttttgtaaagaatccaataataatattaaaaatttcagtaaaatcaagtctacagtgtattatagcattgaaccatgtagc |
317 |
Q |
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| T |
1002912 |
atgtcatttgtccgaaaagttctgtaaagaatccaataataaaattaaaaatttcagtcaaatcaagtctacagtgtattatagcattgaaccatgtagc |
1002813 |
T |
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| Q |
318 |
gcagcttcaacatctccatatatttcatgaaggaaagagatttgacattctagatctaaaaatcaaacagaaagtcggttttagaaaataataaaaagga |
417 |
Q |
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||| || || |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
1002812 |
gcaactccagcatctccatatatttcatgaaggaaagaaatttgaaattctagatctaaaaatcaaacataaagtcagttttagaaaataataaaaagga |
1002713 |
T |
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| Q |
418 |
aatttaagaacaaatttcacctttaattgtggattcggaaaatccaccaagcatccatct |
477 |
Q |
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| T |
1002712 |
aatttaagaacaaatttcacctttaattgtggattcggaaaatccaccaagcatccatct |
1002653 |
T |
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