View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4268_low_6 (Length: 464)
Name: NF4268_low_6
Description: NF4268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4268_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 22 - 455
Target Start/End: Complemental strand, 48013998 - 48013558
Alignment:
| Q |
22 |
aacttatttgctattagataatttatccttatccacggtaaattcatctagtataaactcgccattgattagtttaaaatgattaattatattttagcac |
121 |
Q |
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| T |
48013998 |
aactaatttgctattagataatttatccttatccacggtaaattcatctagtataaactcgccattgattagtttaaaatgattaat---attttagcac |
48013902 |
T |
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| Q |
122 |
taaaacaatgattgatatttcaaaagtagtaattataaataaattgtgaaatagaactgtatgctattacagcatgcatgtagattttgttagtttgata |
221 |
Q |
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| T |
48013901 |
taaaacaatgattgatatttcaaaagtagtaattataaataaattgtgaaatagaactgtatgctattacagtatgcatgtagattttgttagtttgata |
48013802 |
T |
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| Q |
222 |
gagtcggttaaaacttagttggttaattgctttttatctggagagtttattgaatcagtttattatcttttcaatatgattatttcttttaagattctat |
321 |
Q |
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| T |
48013801 |
gagtcggttaaaacttagttggttaattgctttttatctggagagtttattgaatcagttcattatcttttcaatatgattatttcttttaagattctat |
48013702 |
T |
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| Q |
322 |
ctcattgatccaaaaatgttcgaacgagatgattgtt----------attaacgatcatgagtttgaattgaaactnnnnnnntatgattgttataaaat |
411 |
Q |
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| T |
48013701 |
ctcattgatccaaaaatgttcgaacgagatgattgttatttcttttaattaacgatcatgagtttgaattcaaactaaaaaaatatgattgttataaaat |
48013602 |
T |
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| Q |
412 |
cctatttcgaattctatttggatagtgattattctaagaattat |
455 |
Q |
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| T |
48013601 |
cctatttcgaattctatttggatagtgattattctaagaattat |
48013558 |
T |
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