View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4269-Insertion-4 (Length: 82)

Name: NF4269-Insertion-4
Description: NF4269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4269-Insertion-4
NF4269-Insertion-4
[»] chr1 (3 HSPs)
chr1 (1-81)||(6403259-6403339)
chr1 (1-82)||(6419602-6419683)
chr1 (24-72)||(6390033-6390080)
[»] chr3 (2 HSPs)
chr3 (24-72)||(19922838-19922885)
chr3 (24-67)||(19921964-19922006)


Alignment Details
Target: chr1 (Bit Score: 65; Significance: 3e-29; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-29
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 6403259 - 6403339
Alignment:
Q  1 tttttcttcctcaaacaaaagacttgcaactttgaaccatttctactctccgcttctgtttcaaatggaagaagatggaag 81  Q
    |||| |||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6403259 ttttccttcctcaaacaaaaagcttgcaactttgaaccatttccactctccgcttctgtttcaaatggaagaagatggaag 6403339  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 6419602 - 6419683
Alignment:
Q  1 tttttcttcctcaaacaaaagacttgcaactttgaaccatttctactctccgcttctgtttcaaatggaagaagatggaagc 82  Q
    ||||||||||||||||||||  ||||||||||||||||||||| |||||| |||||| ||| ||||||||| ||||||||||    
T  6419602 tttttcttcctcaaacaaaaagcttgcaactttgaaccatttccactctctgcttctctttaaaatggaagtagatggaagc 6419683  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 6390033 - 6390080
Alignment:
Q  24 ttgcaactttgaaccatttctactctccgcttctgtttcaaatggaaga 72  Q
    ||||| |||||||||||||| |||||| |||||||||||||||||||||    
T  6390033 ttgcacctttgaaccatttc-actctctgcttctgtttcaaatggaaga 6390080  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 19922838 - 19922885
Alignment:
Q  24 ttgcaactttgaaccatttctactctccgcttctgtttcaaatggaaga 72  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||    
T  19922838 ttgcaactttgaaccatttc-actctctgcttctgtttcaaatggaaga 19922885  T

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Target: chr3; HSP #2
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 19922006 - 19921964
Alignment:
Q  24 ttgcaactttgaaccatttctactctccgcttctgtttcaaatg 67  Q
    |||||||||||||||||||| |||||| |||| |||||||||||    
T  19922006 ttgcaactttgaaccatttc-actctctgcttatgtttcaaatg 19921964  T

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