View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4269-Insertion-5 (Length: 152)
Name: NF4269-Insertion-5
Description: NF4269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4269-Insertion-5 |
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| [»] scaffold0082 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 126; Significance: 3e-65; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 3e-65
Query Start/End: Original strand, 16 - 149
Target Start/End: Original strand, 38608661 - 38608794
Alignment:
| Q |
16 |
cctgctattatgcgcctcatgctacgagatgctatgctcaggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagc |
115 |
Q |
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| T |
38608661 |
cctgctataatgcgcctcatgctacgagatgcaatgctcaggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagc |
38608760 |
T |
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| Q |
116 |
tcataactctcaacaacatgactattttcgccgt |
149 |
Q |
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| T |
38608761 |
tcataactctcaacaacatgactattttcgccgt |
38608794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 3e-65
Query Start/End: Original strand, 16 - 149
Target Start/End: Original strand, 38793444 - 38793577
Alignment:
| Q |
16 |
cctgctattatgcgcctcatgctacgagatgctatgctcaggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagc |
115 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38793444 |
cctgctataatgcgcctcatgctacgagatgcaatgctcaggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagc |
38793543 |
T |
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| Q |
116 |
tcataactctcaacaacatgactattttcgccgt |
149 |
Q |
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| T |
38793544 |
tcataactctcaacaacatgactattttcgccgt |
38793577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 9e-59
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 38121462 - 38121332
Alignment:
| Q |
16 |
cctgctattatgcgcctcatgctacgagatgctatgctcaggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagc |
115 |
Q |
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| T |
38121462 |
cctgctattatgcgcctcatgctacgagatgcaatggtaaggctccgtaataacggtttcagcatcctctcccttgctatgaaggtaaaatacgcagagc |
38121363 |
T |
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| Q |
116 |
tcataactctcaacaacatgactattttcgc |
146 |
Q |
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| T |
38121362 |
tcataactctcaacaacatgactattttcgc |
38121332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 4e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 4e-58
Query Start/End: Original strand, 12 - 149
Target Start/End: Complemental strand, 28731040 - 28730903
Alignment:
| Q |
12 |
gcttcctgctattatgcgcctcatgctacgagatgctatgctcaggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgca |
111 |
Q |
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||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
28731040 |
gcttcctgctattatgcgcctcatgctacgagacacaacgctcaggctccgtaataacggtttcagcatcctctcccttgcaatgaaggtaaaatacgaa |
28730941 |
T |
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| Q |
112 |
gagctcataactctcaacaacatgactattttcgccgt |
149 |
Q |
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| T |
28730940 |
gagctcataactctcaacaacatgactattttcgccgt |
28730903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 37; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 33997 - 33897
Alignment:
| Q |
16 |
cctgctattatgcgcctcatgctacgagatgctatgctcaggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagc |
115 |
Q |
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|||||||| |||||||| ||||| ||||||| |||||| |||||||||| || || ||||||||||| |||| || |||||||| || ||||| |||| |
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| T |
33997 |
cctgctataatgcgcctgatgctcagagatgccatgctccggctccgtaacaatggcttcagcatcctagccctcgctatgaaggtgaagtacgccgagc |
33898 |
T |
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| Q |
116 |
t |
116 |
Q |
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| T |
33897 |
t |
33897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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