View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4269_high_13 (Length: 248)
Name: NF4269_high_13
Description: NF4269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4269_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 119 - 233
Target Start/End: Complemental strand, 37494710 - 37494597
Alignment:
| Q |
119 |
tcaagaactcctttattcacacttcttcaacattcatttatgtccctttcttcactttctccttcaagagttatcatcttcatttcttaaaatccagatt |
218 |
Q |
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| T |
37494710 |
tcaagaactcctttattcacacttcttcaacatttatttatgtcc-tttcttcgctctctccttcaagagttatcatcttcatttcttaaaatctagatt |
37494612 |
T |
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| Q |
219 |
ctttttccaatttct |
233 |
Q |
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| T |
37494611 |
ctttttccaatttct |
37494597 |
T |
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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 37494827 - 37494776
Alignment:
| Q |
1 |
agttaatggttagtatgacactgttaaggttgatgtggcggatccaaaacaa |
52 |
Q |
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||||||||||| ||||||||||||||||||||| ||||||| |||||||||| |
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| T |
37494827 |
agttaatggttggtatgacactgttaaggttgacgtggcgggtccaaaacaa |
37494776 |
T |
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