View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4269_high_7 (Length: 358)
Name: NF4269_high_7
Description: NF4269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4269_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 20 - 338
Target Start/End: Complemental strand, 30816588 - 30816270
Alignment:
| Q |
20 |
ggtggaaagtgaaagaaagctaacacttttttctccaactcccatttcgtattaacaaaatgggcagtcaagaccatatattggtcagtatttatcgctg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30816588 |
ggtggaaagtgaaagaaagctaacacttttttctccaactcccatttcatattaacaaaatgggcagtcaagaccatatattggtcagtatttatcgctg |
30816489 |
T |
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| Q |
120 |
accacaaggcagatgttaaacaaattttccttgggattgaatgtaaatagcattttaaattttctttttcgcttctatacaactttagaacatcagcctt |
219 |
Q |
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|||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
30816488 |
accacaagtcagatgttaagcaaattttccctgggattgaatgtaaatagcattttaaattttctttttcgcttctaaacaactttagaacatcagcatt |
30816389 |
T |
|
| Q |
220 |
tgctgtgtttctagaaatccccttagcatgaggatgcaaaaaagagtgtaaatcatgaattccgtcgtgttcaacaaaggaaaaagaataattgttcttg |
319 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30816388 |
tgctgtgtttctagaaatccgcttagcatgaggatgcaaaaaagagtgtaaatcatgaattccgtcgtgttcaacaaaggaaaaagaataattgttcttg |
30816289 |
T |
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| Q |
320 |
acaattacctgagcaatct |
338 |
Q |
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|||||||||| |||||||| |
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| T |
30816288 |
acaattacctcagcaatct |
30816270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 20 - 338
Target Start/End: Original strand, 46243306 - 46243625
Alignment:
| Q |
20 |
ggtggaaagtgaaagaaagctaacacttttttctccaactcccatttcgtattaacaaaatgggcagtcaagaccatatattggtcagtatttatcgctg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46243306 |
ggtggaaagtgaaagaaagctaacacttttttctccaactcccatttcatattaacaaaatgggcagtcaagaccatatattggtcagtatttatcgctg |
46243405 |
T |
|
| Q |
120 |
accacaaggcagatgttaaacaaattttccttggg-attgaatgtaaatagcattttaaattttctttttcgcttctatacaactttagaacatcagcct |
218 |
Q |
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|||||||| |||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
46243406 |
accacaagtcagatgttaagcaaattttccctggggattgaatgtaaatagcattttaaattttctttttcgcttctaaacaactttagaacatcagcct |
46243505 |
T |
|
| Q |
219 |
ttgctgtgtttctagaaatccccttagcatgaggatgcaaaaaagagtgtaaatcatgaattccgtcgtgttcaacaaaggaaaaagaataattgttctt |
318 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46243506 |
ttgctgtgtttctagaaatccgcttagcatgaggatgcaaaaaagagtgtaaatcatgaattccgtcgtgttcaacaaaggaaaaagaataattgttctt |
46243605 |
T |
|
| Q |
319 |
gacaattacctgagcaatct |
338 |
Q |
| |
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||||||||||| |||||||| |
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| T |
46243606 |
gacaattacctcagcaatct |
46243625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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