View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4269_high_9 (Length: 286)
Name: NF4269_high_9
Description: NF4269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4269_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 21 - 276
Target Start/End: Complemental strand, 40512343 - 40512088
Alignment:
| Q |
21 |
ggtaccttctttcaatcgagcgtcaagaagcatgttggaaaagtgtgtgcaatatggagaaatcaaattgccaatatggattcttcaattgtcacagtat |
120 |
Q |
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| T |
40512343 |
ggtaccttctttcaatcgagcgtcaagaagcatgttggaaaagtgtgtgcaatatggagaaatcaaattgccaatatggattcttcaattgtcacagtat |
40512244 |
T |
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| Q |
121 |
taaagatgctccaagagtagcttggtttatagctagtaatgtcacaaatttatgttcaccaaatgccggcttttatccgtttggtatatatgctgatgcc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40512243 |
taaagatgctccaagagtagcttggtttatagctagtaatgtcacaaatttatgttcaccaaatgccggcttttatccgtttggtatatatgctgatgcc |
40512144 |
T |
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| Q |
221 |
atgacttccaaagttacatcatcaccattcttcaataagtacttctattgtctctg |
276 |
Q |
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| T |
40512143 |
atgacttccaaagttacatcatcaccattcttcaataagtacttctattgtctctg |
40512088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 21 - 246
Target Start/End: Complemental strand, 40481669 - 40481444
Alignment:
| Q |
21 |
ggtaccttctttcaatcgagcgtcaagaagcatgttggaaaagtgtgtgcaatatggagaaatcaaattgccaatatggattcttcaattgtcacagtat |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40481669 |
ggtaccttctttcaatcgagcgtcaagaagcatgttggaaaagtgtgtgcaatatggagaaatcaaattgccaatatggattcttcaattgtcacagtat |
40481570 |
T |
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| Q |
121 |
taaagatgctccaagagtagcttggtttatagctagtaatgtcacaaatttatgttcaccaaatgccggcttttatccgtttggtatatatgctgatgcc |
220 |
Q |
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| T |
40481569 |
taaagatgctccaagagtagcttggtttatagctagtaatgtcacaaatttatgttcaccaaatgccggcttttatccgtttggtatatatgctgatgcc |
40481470 |
T |
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| Q |
221 |
atgacttccaaagttacatcatcacc |
246 |
Q |
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| T |
40481469 |
atgacttccaaagttacatcatcacc |
40481444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 155 - 276
Target Start/End: Original strand, 21612599 - 21612720
Alignment:
| Q |
155 |
agtaatgtcacaaatttatgttcaccaaatgccggcttttatccgtttggtatatatgctgatgccatgacttccaaagttacatcatcaccattcttca |
254 |
Q |
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|||||||||||||||||||| ||||||||| | |||||||| |||||||||||||| |||||| |||| |||||||||||| | || ||||||| | |
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| T |
21612599 |
agtaatgtcacaaatttatgctcaccaaattctctcttttatcagtttggtatatatggtgatgcagtgacatccaaagttacaacctctgcattcttta |
21612698 |
T |
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| Q |
255 |
ataagtacttctattgtctctg |
276 |
Q |
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|||||||||||| ||||||||| |
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| T |
21612699 |
ataagtacttcttttgtctctg |
21612720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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