View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4269_low_1 (Length: 878)
Name: NF4269_low_1
Description: NF4269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4269_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 770; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 770; E-Value: 0
Query Start/End: Original strand, 20 - 861
Target Start/End: Original strand, 39839021 - 39839860
Alignment:
| Q |
20 |
catctggtcttgcaacggcagcatgtcttagagaacaaggagtacccttcgttgttctcgaaagagctgattgcatagcatcactatggcaaaaaagagc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
39839021 |
catctggtcttgcaacggcagcatgtcttagagaacaaggggtacccttcgttgttctcgaaagagctgattgcatagcatcactatggcaaaaaagaac |
39839120 |
T |
|
| Q |
120 |
ctacgacagattgaaacttcaccttccaaaacaattctgtcaactacctaaccttccaatgcctgaagatttccctgaatacccttcaaagaaacaattc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39839121 |
ctacgacagattgaaacttcaccttccaaaacaattctgtcaactacctaaccttccaatgcctgaagatttccctgaatacccttcaaagaaacaattc |
39839220 |
T |
|
| Q |
220 |
ataagctaccttgaaaactatgctaacaaatttgaaatcaacccgcaattcaacgagtgtgttcaatctgctaagtatgatgaaaccagtggattgtgga |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39839221 |
ataagctaccttgaaaactatgctaacaaatttgaaatcaacccgcaattcaacgagtgtgttcaatctgctaagtatgatgaaaccagtggattgtgga |
39839320 |
T |
|
| Q |
320 |
gggtcaagacaaatgaagttgagtatatttgtaggtggcttgttgttgctaccggcgaaaatgctgagtgtgttactcctgaaattgaaggactttctga |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39839321 |
gggtcaagacaaatgaagttgagtatatttgtaggtggcttgttgttgctaccggcgaaaatgctgagtgtgttactcctgaaattgaaggactttctga |
39839420 |
T |
|
| Q |
420 |
attcaaaggtgaagttgtttatgcttgtgattacaagtcagggaaaaattttgaaggaaagaaagttcttgttgttggatgtggaaattctggaatggaa |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39839421 |
attcaaaggtgaagttgtttatgcttgtgattacaagtcagggaaaaattttgaaggaaagaaagttcttgttgttggatgtggaaattctggaatggaa |
39839520 |
T |
|
| Q |
520 |
ctctcacttgatcttagcaatcatcatgctttaccttccatggttgttcgtagctcggtaggttccttttatgtgtctggtatctgtgtcagtgcttcat |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39839521 |
ctctcacttgatcttagcaatcatcatgctttaccttccatggttgttcgtagctcggtaagttccttttatgtgtctggtatctgtgtcagtgcttcat |
39839620 |
T |
|
| Q |
620 |
agtaattcttttttaacttttgtgnnnnnnnnntctaattgggctgttctgnnnnnnnnatccacaggttcatgtgctaccaagagaaatatttggaata |
719 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39839621 |
agtaattcttttttaacttttgtg--aaaaaaatctaattgggctgttctgttttttttatccacaggttcatgtgctaccaagagaaatatttggaata |
39839718 |
T |
|
| Q |
720 |
tcaacttttgaattagcggttatgatgttgaagtggttaccactttggattgtagacaaacttttgttgattttgacatggttcattttgggtgacatgg |
819 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39839719 |
tcaacttttgaattagcggttatgatgttgaagtggttaccactttggattgtggacaaacttttgttgattttgacatggttcattttgggtgacatgg |
39839818 |
T |
|
| Q |
820 |
aaaaatatggtatcaaaagaccatcaatgggtccattgcagt |
861 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39839819 |
aaaaatatggtatcaaaagaccatcaatgggtccattgcagt |
39839860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 216 - 861
Target Start/End: Complemental strand, 39733741 - 39733098
Alignment:
| Q |
216 |
attcataagctaccttgaaaactatgctaacaaatttgaaatcaacccgcaattcaacgagtgtgttcaatctgctaagtatgatgaaaccagtggattg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39733741 |
attcataagctaccttgaaaactatgctaacaaatttgaaatcaacccgcaattcaacgagtgtgttcaatctgctaagtatgatgaaaccagtggattg |
39733642 |
T |
|
| Q |
316 |
tggagggtcaagacaaatgaagttgagtatatttgtaggtggcttgttgttgctaccggcgaaaatgctgagtgtgttactcctgaaattgaaggacttt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39733641 |
tggagggtcaagacaaatgaagttgagtatatttgtaggtggcttgttgttgctaccggcgaaaatgctgagtgtgttactcctgaaattgaaggacttt |
39733542 |
T |
|
| Q |
416 |
ctgaattcaaaggtgaagttgtttatgcttgtgattacaagtcagggaaaaattttgaaggaaagaaagttcttgttgttggatgtggaaattctggaat |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39733541 |
ctgaattcaaaggtgaagttgtttatgcttgtgattacaagtcagggaaaaattttgaaggaaagaaagttcttgttgttggatgtggaaattctggaat |
39733442 |
T |
|
| Q |
516 |
ggaactctcacttgatcttagcaatcatcatgctttaccttccatggttgttcgtagctcggtaggttccttttatgtgtctggtatctgtgtcagtgct |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
39733441 |
ggaactctcacttgatcttagcaatcatcatgctttaccttccatggttgttcgtagctcggtaagttccttttatgtgtctggtatatgtgtcagtgct |
39733342 |
T |
|
| Q |
616 |
tcatagtaattcttttttaacttttgtgnnnnnnnnntctaattgggctgttctgnnnnnnnnatccacaggttcatgtgctaccaagagaaatatttgg |
715 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39733341 |
tcatagtaattcttttttaacttttgtg--aaaaaaatctaattgggctgttctgttttttttatccacaggttcatgtgctaccaagagaaatatttgg |
39733244 |
T |
|
| Q |
716 |
aatatcaacttttgaattagcggttatgatgttgaagtggttaccactttggattgtagacaaacttttgttgattttgacatggttcattttgggtgac |
815 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39733243 |
aatatcaacttttgaattagcggttatgatgttgaagtggttaccactttggattgtggacaaacttttgttgattttgacatggttcattttgggtgac |
39733144 |
T |
|
| Q |
816 |
atggaaaaatatggtatcaaaagaccatcaatgggtccattgcagt |
861 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39733143 |
atggaaaaatatggtatcaaaagaccatcaatgggtccattgcagt |
39733098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 127 - 267
Target Start/End: Original strand, 31290041 - 31290181
Alignment:
| Q |
127 |
agattgaaacttcaccttccaaaacaattctgtcaactacctaaccttccaatgcctgaagatttccctgaatacccttcaaagaaacaattcataagct |
226 |
Q |
| |
|
||||| |||||||||||||| |||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
31290041 |
agattcaaacttcaccttcctaaaccattatgtcaactacctaaccttccaatgcttgaagatttccctgaatacccttcaaagaaacagttcataaact |
31290140 |
T |
|
| Q |
227 |
accttgaaaactatgctaacaaatttgaaatcaacccgcaa |
267 |
Q |
| |
|
| |||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
31290141 |
atcttgtaaactatgctaacaaatttgaaatctccccgcaa |
31290181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 140 - 272
Target Start/End: Complemental strand, 31290748 - 31290616
Alignment:
| Q |
140 |
accttccaaaacaattctgtcaactacctaaccttccaatgcctgaagatttccctgaatacccttcaaagaaacaattcataagctaccttgaaaacta |
239 |
Q |
| |
|
||||||| |||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
31290748 |
accttcctaaacaattgtgtcaactacttaaccttccaatgcctgaagatttccatgaatacccttcaaagaaacagttcataaactaccttgaaaacta |
31290649 |
T |
|
| Q |
240 |
tgctaacaaatttgaaatcaacccgcaattcaa |
272 |
Q |
| |
|
| | ||||||||||||||| |||| |||||||| |
|
|
| T |
31290648 |
tccgaacaaatttgaaatcgacccacaattcaa |
31290616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 684 - 733
Target Start/End: Original strand, 31290573 - 31290622
Alignment:
| Q |
684 |
caggttcatgtgctaccaagagaaatatttggaatatcaacttttgaatt |
733 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31290573 |
caggctcatgtcttaccaagagaaatatttggaatatcaactcttgaatt |
31290622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 168; Significance: 1e-89; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 20 - 579
Target Start/End: Complemental strand, 29858009 - 29857435
Alignment:
| Q |
20 |
catctggtcttgcaacggcagcatgtcttagagaacaaggagtacccttcgttgttctcgaaagagctgattgcatagcatcactatggcaaaaaagagc |
119 |
Q |
| |
|
|||| ||||| ||||| ||||||||||||| ||||||||||||||||| | ||||| |||||| | |||||||||| |||||||||||||||||| | |
|
|
| T |
29858009 |
catcaggtctagcaacagcagcatgtcttaagcaacaaggagtacccttcatggttcttgaaagatcaaattgcatagcttcactatggcaaaaaagaac |
29857910 |
T |
|
| Q |
120 |
ctacgacagattgaaacttcaccttccaaaacaattctgtcaactacctaaccttccaatgcctgaagatttccctgaatacccttcaaagaaacaattc |
219 |
Q |
| |
|
|| |||||||| ||||||||||| || |||||||||||||||||||||||| ||||| | || |||| || |||||||| || |||||||||| ||| |
|
|
| T |
29857909 |
atatgacagattaaaacttcacctccctaaacaattctgtcaactacctaactttccattcccacaagaatttcctgaatatccaacaaagaaacagttc |
29857810 |
T |
|
| Q |
220 |
ataagctaccttgaaaactatgctaacaaatttgaaatcaacccgcaattcaacgagtgtgttcaatctgctaagtatgatgaaaccagtggattgtgga |
319 |
Q |
| |
|
|||| ||| |||||| ||| || || | |||||||||||||||| ||||||||||||||||||||||||||| |||||||| || | ||| ||||||| |
|
|
| T |
29857809 |
ataaactatcttgaatcctacgcgaaacactttgaaatcaacccgcgattcaacgagtgtgttcaatctgctaaatatgatgagactaatgggttgtgga |
29857710 |
T |
|
| Q |
320 |
gggtcaagac------------aaatgaagttgagtatatttgtaggtggcttgttgttgctaccggcgaaaatgctgagtgtgttactcctgaaattga |
407 |
Q |
| |
|
| || |||| |||||||||||||||||||||||||| |||||| |||||||| || || ||||| ||||||||| ||| | ||||| |
|
|
| T |
29857709 |
gagttgagactgtttccaatggaaatgaagttgagtatatttgtaggtcgcttgtggttgctactggtgagaatgcagagtgtgttgtgccttatattga |
29857610 |
T |
|
| Q |
408 |
agg---actttctgaattcaaaggtgaagttgtttatgcttgtgattacaagtcagggaaaaattttgaaggaaagaaagttcttgttgttggatgtgga |
504 |
Q |
| |
|
||| | | ||||||||| |||||| || || ||||||||||||| || ||||| ||| |||| ||| ||||||||| | |||||||| ||||| |
|
|
| T |
29857609 |
agggttaggtggtgaattcaagggtgaaattattcatgcttgtgattataaatcaggtgaaagttttagagggaagaaagttttggttgttggttgtggt |
29857510 |
T |
|
| Q |
505 |
aattctggaatggaactctcacttgatcttagcaatcatcatgctttaccttccatggttgttcgtagctcggta |
579 |
Q |
| |
|
||||||||||||||||| || ||||||||| |||||||| |||| | |||||| || ||| |||||||||||||| |
|
|
| T |
29857509 |
aattctggaatggaactttctcttgatctttgcaatcataatgcatcaccttctattgttcttcgtagctcggta |
29857435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 333 - 380
Target Start/End: Original strand, 17407974 - 17408021
Alignment:
| Q |
333 |
tgaagttgagtatatttgtaggtggcttgttgttgctaccggcgaaaa |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
17407974 |
tgaagttgagtatatttgtaggtggcttgtggttgctaccggtgaaaa |
17408021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 475 - 534
Target Start/End: Original strand, 17408116 - 17408175
Alignment:
| Q |
475 |
ggaaagaaagttcttgttgttggatgtggaaattctggaatggaactctcacttgatctt |
534 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||| |||||| | || ||||||||| |
|
|
| T |
17408116 |
ggaaaaaatgttcttgttgttggatgtggaaattctggcatggaagtttctcttgatctt |
17408175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 683 - 794
Target Start/End: Complemental strand, 29857150 - 29857039
Alignment:
| Q |
683 |
acaggttcatgtgctaccaagagaaatatttggaatatcaacttttgaattagcggttatgatgttgaagtggttaccactttggattgtagacaaactt |
782 |
Q |
| |
|
|||||||||||| | || |||||| | ||||| | |||||| |||| ||| || ||||||||| |||| ||||||||| ||||||| || ||||| || |
|
|
| T |
29857150 |
acaggttcatgttttgcctagagaagtttttgggaaatcaacatttggattggcagttatgatgatgaaatggttaccagtttggatagttgacaagatt |
29857051 |
T |
|
| Q |
783 |
ttgttgattttg |
794 |
Q |
| |
|
|||||||||||| |
|
|
| T |
29857050 |
ttgttgattttg |
29857039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 209
Target Start/End: Original strand, 17407750 - 17407826
Alignment:
| Q |
133 |
aaacttcaccttccaaaacaattctgtcaactacctaaccttccaatgcctgaagatttccctgaatacccttcaaa |
209 |
Q |
| |
|
|||||||| ||||| |||||||| ||||||||||| || ||||| | ||||| | |||||||||||||||||||| |
|
|
| T |
17407750 |
aaacttcatcttcctaaacaattgtgtcaactacccaattttccattccctgatcacttccctgaatacccttcaaa |
17407826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 595 - 624
Target Start/End: Complemental strand, 19040219 - 19040190
Alignment:
| Q |
595 |
tctggtatctgtgtcagtgcttcatagtaa |
624 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
19040219 |
tctggtatctgtgtcagtgcttcatagtaa |
19040190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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