View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4269_low_11 (Length: 276)

Name: NF4269_low_11
Description: NF4269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4269_low_11
NF4269_low_11
[»] chr4 (2 HSPs)
chr4 (12-261)||(40820580-40820831)
chr4 (39-248)||(40825261-40825472)
[»] chr7 (11 HSPs)
chr7 (21-246)||(20293019-20293246)
chr7 (21-243)||(20169502-20169726)
chr7 (21-243)||(20272212-20272436)
chr7 (37-245)||(20277972-20278182)
chr7 (23-194)||(20282536-20282711)
chr7 (151-248)||(20302353-20302450)
chr7 (134-248)||(20300263-20300377)
chr7 (24-109)||(20064097-20064182)
chr7 (37-109)||(20230076-20230148)
chr7 (39-212)||(20262661-20262836)
chr7 (46-246)||(20287673-20287878)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 261
Target Start/End: Complemental strand, 40820831 - 40820580
Alignment:
Q  12 atgagatgaacaagccgagaatcatagtgtgatgtttatggtatatgtgcagcatttgcaagctgtagtttaatgagctcgccaatatgtagctgttttc 111  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||     
T  40820831 atgacatggacaagccgagaatcatagtgtgatgtttatggtatatgtgcagcatttgcaagctgtagtttattgagctcgccaatatgtagctgtttta 40820732  T
Q  112 gaggatttgtacccagaaaca--gaagaatggagtatacataattggacgggtcggtgtgttacgaggacacctttggagtgtggaaggatcagcaataa 209  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  40820731 gaggatttgtacccagaaacatagaagaatggagtatacataattggacgggtcggtgtgttaggaggacacctttggagtgtgaaaggatcagcaataa 40820632  T
Q  210 aaccacgagtacaaaggaaaatgggtttttgaaattgcatgcggttgaagtt 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40820631 aaccacgagtacaaaggaaaatgggtttttgaaattgcatgcggttgaagtt 40820580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 248
Target Start/End: Complemental strand, 40825472 - 40825261
Alignment:
Q  39 tgtgatgtttatggtatatgtgcagcatttgcaagctgtagtttaatgagctcgccaatatgtagctgttttcgaggatttgtacccagaaacagaa--g 136  Q
    ||||| ||||||||||||||||  |||||| |||||||||||| | |||  |  || ||||| || |||||  ||||||||| |||||| |||| |   |    
T  40825472 tgtgacgtttatggtatatgtggggcattttcaagctgtagttcattgaagttaccgatatgcagttgtttgagaggatttgaacccaggaacaaacagg 40825373  T
Q  137 aatggagtatacataattggacgggtcggtgtgttacgaggacacctttggagtgtggaaggatcagcaataaaaccacgagtacaaaggaaaatgggtt 236  Q
    | |||| || ||| || ||||| ||| |||||||||  ||||||| |||| |||||| || | |||  ||||| || || |||||||||||| |||||||    
T  40825372 agtggaatagacacaactggacaggtgggtgtgttagaaggacacttttgcagtgtgaaaaggtcaataataagacaacaagtacaaaggaagatgggtt 40825273  T
Q  237 tttgaaattgca 248  Q
    ||||||||||||    
T  40825272 tttgaaattgca 40825261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 141; Significance: 5e-74; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 21 - 246
Target Start/End: Original strand, 20293019 - 20293246
Alignment:
Q  21 acaagccgagaatcatagtgtgatgtttatggtatatgtgcagcatttgcaagctgtagtttaatgagctcgccaatatgtagctgttttcgaggatttg 120  Q
    |||| |||||||||| ||||||||||||||||||||||||  || |||||||||||||||| | ||||||| |||||||||||||||||  |||||||||    
T  20293019 acaacccgagaatcagagtgtgatgtttatggtatatgtggggcctttgcaagctgtagttcattgagctcaccaatatgtagctgtttgagaggatttg 20293118  T
Q  121 tacccagaaaca--gaagaatggagtatacataattggacgggtcggtgtgttacgaggacacctttggagtgtggaaggatcagcaataaaaccacgag 218  Q
    ||||||||||||  ||||||||||||| |||||||||||| ||| ||||||||| |||||||||||||||||||| |||| ||| |||||||||||| ||    
T  20293119 tacccagaaacatagaagaatggagtaaacataattggaccggtgggtgtgttaggaggacacctttggagtgtgaaagggtcaacaataaaaccaccag 20293218  T
Q  219 tacaaaggaaaatgggtttttgaaattg 246  Q
    |||||||||| |||||||||||||||||    
T  20293219 tacaaaggaagatgggtttttgaaattg 20293246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 21 - 243
Target Start/End: Complemental strand, 20169726 - 20169502
Alignment:
Q  21 acaagccgagaatcatagtgtgatgtttatggtatatgtgcagcatttgcaagctgtagtttaatgagctcgccaatatgtagctgttttcgaggatttg 120  Q
    ||||| || |||||| ||||||||||||| |   ||||||  ||||||||||| |||| || | ||||||| |||| ||||||||||||  |||| ||||    
T  20169726 acaagtcgggaatcaaagtgtgatgtttacgacttatgtggggcatttgcaagttgtaattcattgagctcaccaacatgtagctgtttgagagggtttg 20169627  T
Q  121 tacccagaaaca--gaagaatggagtatacataattggacgggtcggtgtgttacgaggacacctttggagtgtggaaggatcagcaataaaaccacgag 218  Q
     |||||||||||  ||| |||||| ||||||||| ||||| ||| ||||||||   |||||||||||| |||||| |||| ||| |||||||||||| ||    
T  20169626 aacccagaaacatagaacaatggaatatacataactggaccggtgggtgtgttcgaaggacacctttgcagtgtgaaagggtcaacaataaaaccacaag 20169527  T
Q  219 tacaaaggaaaatgggtttttgaaa 243  Q
    |||||||||| ||||||||||||||    
T  20169526 tacaaaggaagatgggtttttgaaa 20169502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 20272212 - 20272436
Alignment:
Q  21 acaagccgagaatcatagtgtgatgtttatggtatatgtgcagcatttgcaagctgtagtttaatgagctcgccaatatgtagctgttttcgaggatttg 120  Q
    ||||||||||| ||| ||||||||||||||||||||||||  |||||||||| |||||||| |  || ||| |||||||| |||||| |   ||||||||    
T  20272212 acaagccgagattcagagtgtgatgtttatggtatatgtggcgcatttgcaatctgtagttcatcgacctcaccaatatgcagctgtctgaaaggatttg 20272311  T
Q  121 tacccagaaacaga--agaatggagtatacataattggacgggtcggtgtgttacgaggacacctttggagtgtggaaggatcagcaataaaaccacgag 218  Q
     ||| | ||| | |   |||||||  ||| | || ||| | ||| ||||||||| || |||||||||| |||| | |||| ||  |||||||||||| ||    
T  20272312 aacctaaaaatatacgtgaatggaaaataaacaactggtctggtgggtgtgttaggaagacacctttgcagtgcgaaagggtccacaataaaaccacaag 20272411  T
Q  219 tacaaaggaaaatgggtttttgaaa 243  Q
    |||||||||| ||||| ||||||||    
T  20272412 tacaaaggaagatgggattttgaaa 20272436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 245
Target Start/End: Original strand, 20277972 - 20278182
Alignment:
Q  37 agtgtgatgtttatggtatatgtgcagcatttgcaagctgtagtttaatgagctcgccaatatgtagctgttttcgaggatttgtacccagaaac--aga 134  Q
    ||||||||||||| ||||||||||  ||||||||||||||||||| | ||  ||| |||||||||| |||| |  ||||||||| ||| ||||||  | |    
T  20277972 agtgtgatgtttacggtatatgtggggcatttgcaagctgtagttcattgttctcaccaatatgtatctgtctgagaggatttgaacctagaaacataca 20278071  T
Q  135 agaatggagtatacataattggacgggtcggtgtgttacgaggacacctttggagtgtggaaggatcagcaataaaaccacgagtacaaaggaaaatggg 234  Q
    |||||||| |  |||||| ||||| ||| ||||||||| ||| ||  ||||| ||||| | |||   | ||||||||||||  | | ||||||| ||| |    
T  20278072 agaatggaatggacataactggaccggtgggtgtgttaggagaaccactttgcagtgtagtagggataacaataaaaccacacggagaaaggaagatgcg 20278171  T
Q  235 tttttgaaatt 245  Q
    |||||||||||    
T  20278172 tttttgaaatt 20278182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 194
Target Start/End: Original strand, 20282536 - 20282711
Alignment:
Q  23 aagccgagaatcatagtgtgatgtttatggtatatgtgcagcatttgcaagctgtagtttaatgagctcgccaatatgta--gctgttttcgaggatttg 120  Q
    ||||| ||| ||| ||||||||| ||||||||||||||  |||||||||||||||| || | ||  ||| ||||||||||   |||| |  |||||||||    
T  20282536 aagccaagactcagagtgtgatgcttatggtatatgtggggcatttgcaagctgtaattcattggtctcaccaatatgtatctctgtctgagaggatttg 20282635  T
Q  121 tacccagaaac--agaagaatggagtatacataattggacgggtcggtgtgttacgaggacacctttggagtgtgg 194  Q
     ||| ||||||  | ||||||||| ||||||||| ||||| ||| ||||||||| ||| || |||||| |||||||    
T  20282636 aacctagaaacatacaagaatggaatatacataactggaccggtgggtgtgttaggagaacccctttgcagtgtgg 20282711  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 248
Target Start/End: Original strand, 20302353 - 20302450
Alignment:
Q  151 aattggacgggtcggtgtgttacgaggacacctttggagtgtggaaggatcagcaataaaaccacgagtacaaaggaaaatgggtttttgaaattgca 248  Q
    ||||||||  || ||||||||| ||| | | ||||| |||||| |||| ||| |||||||||||| |||||||| ||| |||||||||||||||||||    
T  20302353 aattggactagtgggtgtgttaggagaagatctttgcagtgtgaaagggtcaacaataaaaccacaagtacaaaagaagatgggtttttgaaattgca 20302450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 248
Target Start/End: Original strand, 20300263 - 20300377
Alignment:
Q  134 aagaatggagtatacataattggacgggtcggtgtgttacgaggacacctttggagtgtggaaggatcagcaataaaaccacgagtacaaaggaaaatgg 233  Q
    ||||||||| || | | |||||||| ||| ||||||| | ||||||| ||||  |||||  |||| ||| |||||||||||| |||||||||||| ||||    
T  20300263 aagaatggaatagaaacaattggactggtgggtgtgtcaggaggacagcttttcagtgttaaagggtcaacaataaaaccaccagtacaaaggaagatgg 20300362  T
Q  234 gtttttgaaattgca 248  Q
     ||||||| ||||||    
T  20300363 atttttgatattgca 20300377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 20064182 - 20064097
Alignment:
Q  24 agccgagaatcatagtgtgatgtttatggtatatgtgcagcatttgcaagctgtagtttaatgagctcgccaatatgtagctgttt 109  Q
    |||||| ||||| |||||||||| ||||||| |||||  ||||||||||||||||||| | ||| | | |||||||| ||||||||    
T  20064182 agccgaaaatcagagtgtgatgtatatggtacatgtggggcatttgcaagctgtagttcattgaacacaccaatatgcagctgttt 20064097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 20230076 - 20230148
Alignment:
Q  37 agtgtgatgtttatggtatatgtgcagcatttgcaagctgtagtttaatgagctcgccaatatgtagctgttt 109  Q
    ||||||||||||||||| ||||||  |||||| ||||||||| || | ||||| ||||||| || ||||||||    
T  20230076 agtgtgatgtttatggtctatgtggggcatttacaagctgtaattcattgagcacgccaatttgcagctgttt 20230148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 212
Target Start/End: Original strand, 20262661 - 20262836
Alignment:
Q  39 tgtgatgtttatggtatatgtgcagcatttgcaagctgtagtttaatgagctcgccaatatgtagctgttttcgaggatttgtacccagaaacagaag-- 136  Q
    ||||||||||||||| | |||| || |||| ||||||||| || | ||||||| ||  |||| || |||||   |||||||| ||||||||| |   |      
T  20262661 tgtgatgtttatggtctctgtggagaatttacaagctgtaattcattgagctcaccggtatgcagttgtttgaaaggatttgaacccagaaatactcgtg 20262760  T
Q  137 aatggagtatacataattggacgggtcggtgtgttacgaggacacctttggagtgtggaaggatcagcaataaaac 212  Q
    ||||||||| | | || ||||| ||  ||||||||| | ||| ||||||| |||||| ||||||||||||||||||    
T  20262761 aatggagtagaaacaactggactggcgggtgtgttaggcggagacctttgcagtgtgaaaggatcagcaataaaac 20262836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 246
Target Start/End: Original strand, 20287673 - 20287878
Alignment:
Q  46 tttatggtatatgtgcagcatttgcaagctgtagtttaatgagctcgccaatatgtagctgttttcgaggatttgtacccagaaacagaa--gaatggag 143  Q
    |||||||||||||||  ||||| ||||||||||||| | |||  |  |||||||| || |||||  ||||||||| |||||| |||| |   || ||||     
T  20287673 tttatggtatatgtggggcattcgcaagctgtagttcattgaagttaccaatatgcagttgtttgagaggatttgaacccaggaacaaacaggagtggaa 20287772  T
Q  144 tatacataattggacgggtcggtgtgttacgaggacacctttggagtgtggaaggatcagcaataaaaccacgagtacaaag---gaaaatgggtttttg 240  Q
    || ||| || ||||| ||| |||||||||  |||| || |||| |||||| |||| |||  ||||| ||||| |||||||||   ||| |||| ||||||    
T  20287773 tagacacaactggactggtgggtgtgttagaaggatacttttgcagtgtgaaagggtcaataataacaccacaagtacaaagaaggaagatggatttttg 20287872  T
Q  241 aaattg 246  Q
    ||||||    
T  20287873 aaattg 20287878  T

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