View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4269_low_2 (Length: 583)
Name: NF4269_low_2
Description: NF4269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4269_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 108; Significance: 6e-54; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 103 - 318
Target Start/End: Complemental strand, 34348442 - 34348234
Alignment:
| Q |
103 |
tctaagtgtagagatagaaacatattattcccatgcattgatactcatcattgttctaatgcaaataaattcaactgaggccaagtagaattgcagttgt |
202 |
Q |
| |
|
|||||| |||||||||||| || | ||||||||||||||| |||||||||||||||||| |||||||||||||||| | ||| |||||||||||||| |
|
|
| T |
34348442 |
tctaagggtagagatagaattatttgattcccatgcattgacgctcatcattgttctaatggaaataaattcaactgatg-caattagaattgcagttgc |
34348344 |
T |
|
| Q |
203 |
gaaaacttcaaagtcctttacattgcatataagaaatgtaaagtttgttactagttagttatactaattatatttgttcttctcgttgttttcattatga |
302 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||| |||| || |||||||||||||||||||||| ||||| |||||||| ||||||||||||||| |
|
|
| T |
34348343 |
aaaagcttcaaagtcctttacaatgcatataagatatgttaa----gttactagttagttatactaat--tattttttcttctcattgttttcattatga |
34348250 |
T |
|
| Q |
303 |
ttggaatacacattaa |
318 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
34348249 |
ttggaatacacattaa |
34348234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 451 - 566
Target Start/End: Complemental strand, 34348199 - 34348086
Alignment:
| Q |
451 |
cttccaagtttatgtcttataacacttttacaaattttattaatgcagaattctggtaaattnnnnnnntgtgagggcacaaagcaagatctaaaaagtc |
550 |
Q |
| |
|
|||||||||||| ||||| ||||||||| | ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34348199 |
cttccaagtttacgtcttgtaacactttaa--aattttattgatgcagaattctggtaaattaaaaaaatgtgagggcacaaagcaagatctaaaaagtc |
34348102 |
T |
|
| Q |
551 |
gaggactatgtttggt |
566 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
34348101 |
gaggactatgtttggt |
34348086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University