View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4269_low_3 (Length: 572)

Name: NF4269_low_3
Description: NF4269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4269_low_3
NF4269_low_3
[»] chr8 (4 HSPs)
chr8 (417-558)||(6579297-6579438)
chr8 (417-557)||(27268047-27268187)
chr8 (417-557)||(12664010-12664150)
chr8 (418-538)||(27005048-27005167)
[»] chr4 (4 HSPs)
chr4 (417-558)||(29710944-29711085)
chr4 (417-557)||(1690186-1690329)
chr4 (1-246)||(28563724-28563961)
chr4 (418-538)||(35536076-35536195)
[»] chr6 (1 HSPs)
chr6 (432-557)||(16484208-16484333)
[»] chr5 (2 HSPs)
chr5 (432-557)||(21818577-21818702)
chr5 (505-557)||(22008826-22008878)
[»] chr1 (1 HSPs)
chr1 (248-379)||(36676038-36676172)
[»] chr3 (1 HSPs)
chr3 (91-242)||(20042148-20042292)
[»] scaffold0194 (1 HSPs)
scaffold0194 (331-364)||(26548-26581)
[»] chr7 (1 HSPs)
chr7 (286-367)||(46922039-46922120)


Alignment Details
Target: chr8 (Bit Score: 110; Significance: 4e-55; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 417 - 558
Target Start/End: Original strand, 6579297 - 6579438
Alignment:
Q  417 aggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcacaatc 516  Q
    |||||||||||||  |||||||||||||||||||| |||||||||||| |||||||||| ||||||||  ||||||||||||||||||||||||||||||    
T  6579297 aggcaaaatccaaagtatattcagaaatgcacatgtagcaaacaaaatctgattgaagcgttggttcatgacacaaaacacaatcacaaaattcacaatc 6579396  T
Q  517 acttacttgaaagaccaaaatcaaaccgtcacagttacattt 558  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  6579397 acttacttgaaagaccaaaatcgaaccgtcacagttacattt 6579438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 417 - 557
Target Start/End: Complemental strand, 27268187 - 27268047
Alignment:
Q  417 aggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcacaatc 516  Q
    |||||||||||||  |||||||||||||||||||| |||||||||||| |||||||||| ||||||||  ||||||||||||||||||||||||||||||    
T  27268187 aggcaaaatccaaagtatattcagaaatgcacatgtagcaaacaaaatctgattgaagcgttggttcatgacacaaaacacaatcacaaaattcacaatc 27268088  T
Q  517 acttacttgaaagaccaaaatcaaaccgtcacagttacatt 557  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  27268087 acttacttgaaagaccaaaatcgaaccgtcacagttacatt 27268047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 417 - 557
Target Start/End: Original strand, 12664010 - 12664150
Alignment:
Q  417 aggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcacaatc 516  Q
    |||||||||||||  |||||| ||||||||||||| |||||||| ||| |||||||| | ||||||||  |||||||||||||||  |||||||||||||    
T  12664010 aggcaaaatccaaagtatatttagaaatgcacatgtagcaaacagaatctgattgaaacgttggttcatgacacaaaacacaatcgaaaaattcacaatc 12664109  T
Q  517 acttacttgaaagaccaaaatcaaaccgtcacagttacatt 557  Q
    |||||||||||| ||||||||| ||||||||||||||||||    
T  12664110 acttacttgaaataccaaaatcgaaccgtcacagttacatt 12664150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 418 - 538
Target Start/End: Original strand, 27005048 - 27005167
Alignment:
Q  418 ggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcacaatca 517  Q
    ||||||| ||||  |||||||||||||||||||| |||||||||||| |||||||||  ||||||||  ||||||| ||||||||||||| |||||||||    
T  27005048 ggcaaaacccaaagtatattcagaaatgcacatgtagcaaacaaaatctgattgaagtgttggttcatgacacaaa-cacaatcacaaaaatcacaatca 27005146  T
Q  518 cttacttgaaagaccaaaatc 538  Q
    |||||||||||||||||||||    
T  27005147 cttacttgaaagaccaaaatc 27005167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 4e-55; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 417 - 558
Target Start/End: Original strand, 29710944 - 29711085
Alignment:
Q  417 aggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcacaatc 516  Q
    |||||||||||||  |||||||||||||||||||| |||||||||||| |||||||||| ||||||||  ||||||||||||||||||||||||||||||    
T  29710944 aggcaaaatccaaagtatattcagaaatgcacatgtagcaaacaaaatctgattgaagcgttggttcatgacacaaaacacaatcacaaaattcacaatc 29711043  T
Q  517 acttacttgaaagaccaaaatcaaaccgtcacagttacattt 558  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  29711044 acttacttgaaagaccaaaatcgaaccgtcacagttacattt 29711085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 417 - 557
Target Start/End: Complemental strand, 1690329 - 1690186
Alignment:
Q  417 aggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacac---aatcacaaaattcaca 513  Q
    |||||||||||||  |||||||||||||||||||| |||||||||||| |||||||||| ||| ||||  ||||||||||    || |||||||||||||    
T  1690329 aggcaaaatccaaagtatattcagaaatgcacatgtagcaaacaaaatctgattgaagcgttgattcatgacacaaaacaacagaaccacaaaattcaca 1690230  T
Q  514 atcacttacttgaaagaccaaaatcaaaccgtcacagttacatt 557  Q
    |||||||||||||||| |||||||| ||||||||||||||||||    
T  1690229 atcacttacttgaaaggccaaaatcgaaccgtcacagttacatt 1690186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 28563724 - 28563961
Alignment:
Q  1 atataaacatgtataacacgtgaatccagatacaaactacttagaagcattcaattagaatttcaatcaaatccacaaagttnnnnnnnntgtcaagagc 100  Q
    ||||||||| ||||||||| ||||| |||| ||||| ||||  |||||| ||||||||| ||| || || ||||| ||||||        ||  || |||    
T  28563724 atataaacaagtataacacatgaattcagaaacaaattactaggaagcaatcaattagagtttaaaacatatccataaagttgtaaata-tgcaaatagc 28563822  T
Q  101 ttacgctttgggctgcctctgcagttccaaactcaacatgtctaaagcatttaaaccttccatcctcaatcctcatccaaagcaagacgtacatcaacaa 200  Q
    |||||||||||||||||||||||| | ||||||||||||||| ||||| ||||||||||||        ||||||||| ||| || ||||||||||||||    
T  28563823 ttacgctttgggctgcctctgcagatgcaaactcaacatgtccaaagcctttaaaccttcc-------ctcctcatccgaagaaaaacgtacatcaacaa 28563915  T
Q  201 cctctccgcaatcttggaagaaattttctctaaaaaatttcagtta 246  Q
    |||||||||| ||||||||||| |||||||| || |||||||||||    
T  28563916 cctctccgcagtcttggaagaacttttctctgaataatttcagtta 28563961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 418 - 538
Target Start/End: Complemental strand, 35536195 - 35536076
Alignment:
Q  418 ggcaaaatccaacctatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcacaatca 517  Q
    ||||||| ||||  |||||||||||||||||||| |||||||||||| |||||||||   |||||||  ||||||| ||||||||||||| |||||||||    
T  35536195 ggcaaaacccaaagtatattcagaaatgcacatgtagcaaacaaaatctgattgaagtgatggttcatgacacaaa-cacaatcacaaaaatcacaatca 35536097  T
Q  518 cttacttgaaagaccaaaatc 538  Q
    |||||||||||||||||||||    
T  35536096 cttacttgaaagaccaaaatc 35536076  T

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Target: chr6 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 432 - 557
Target Start/End: Complemental strand, 16484333 - 16484208
Alignment:
Q  432 tatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcacaatcacttacttgaaagac 531  Q
    |||||||||||||||||||| |||||||||||| |||||||||| ||||||||  ||||||||||||| ||||||||||||| | |||||||||||||||    
T  16484333 tatattcagaaatgcacatgtagcaaacaaaatctgattgaagcgttggttcatgacacaaaacacaaccacaaaattcacagtaacttacttgaaagac 16484234  T
Q  532 caaaatcaaaccgtcacagttacatt 557  Q
    ||||||| ||||||||||||||||||    
T  16484233 caaaatcgaaccgtcacagttacatt 16484208  T

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Target: chr5 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 432 - 557
Target Start/End: Original strand, 21818577 - 21818702
Alignment:
Q  432 tatattcagaaatgcacatgcagcaaacaaaatttgattgaagcattggttcaccacacaaaacacaatcacaaaattcacaatcacttacttgaaagac 531  Q
    |||||||||||||||||||| |||||||||||| |||||||||| ||||||||  ||||||||||||| ||||||||||||| | |||||||||||||||    
T  21818577 tatattcagaaatgcacatgtagcaaacaaaatctgattgaagcgttggttcatgacacaaaacacaaccacaaaattcacagtaacttacttgaaagac 21818676  T
Q  532 caaaatcaaaccgtcacagttacatt 557  Q
    ||||||| ||||||||||||||||||    
T  21818677 caaaatcgaaccgtcacagttacatt 21818702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 505 - 557
Target Start/End: Original strand, 22008826 - 22008878
Alignment:
Q  505 aaattcacaatcacttacttgaaagaccaaaatcaaaccgtcacagttacatt 557  Q
    |||||||||||||||||||| ||| ||| ||| ||||||| |||| |||||||    
T  22008826 aaattcacaatcacttacttcaaataccgaaaccaaaccgacacaattacatt 22008878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 248 - 379
Target Start/End: Original strand, 36676038 - 36676172
Alignment:
Q  248 atccacccgcatcatcagatttcacctctc---ctttcctaacaccaacaaaatgaaacttgtgctcaagctctttgacaaagttaatagcccctccaat 344  Q
    ||||||| || ||||||||||||||| |||   ||||| || |||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  36676038 atccaccagcttcatcagatttcaccactctttctttcttagcaccaagaaaatgaaacttgtgctcaagctctttaacaaagttaatagctcctccaat 36676137  T
Q  345 tatagaagcttgatcaccctgcattcaccaacaac 379  Q
    |||||||||||||||||||||||||||||||||||    
T  36676138 tatagaagcttgatcaccctgcattcaccaacaac 36676172  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 91 - 242
Target Start/End: Complemental strand, 20042292 - 20042148
Alignment:
Q  91 tgtcaagagcttacgctttgggctgcctctgcagttccaaactcaacatgtctaaagcatttaaaccttccatcctcaatcctcatccaaagcaagacgt 190  Q
    |||||||||| || |  ||||||||||||||||||| ||||||||||||||| ||||| ||| | | |||||||||||     ||    | |||||||||    
T  20042292 tgtcaagagcgtatgtattgggctgcctctgcagttgcaaactcaacatgtccaaagcctttgagctttccatcctca-----ca--agacgcaagacgt 20042200  T
Q  191 acatcaacaacctctccgcaatcttggaagaaattttctctaaaaaatttca 242  Q
    ||||||||||||||||| ||| || ||||||| |||||||| || |||||||    
T  20042199 acatcaacaacctctccacaaactcggaagaagttttctctgaataatttca 20042148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 331 - 364
Target Start/End: Complemental strand, 26581 - 26548
Alignment:
Q  331 atagcccctccaattatagaagcttgatcaccct 364  Q
    ||||||||||||||||||||||||||||||||||    
T  26581 atagcccctccaattatagaagcttgatcaccct 26548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 367
Target Start/End: Complemental strand, 46922120 - 46922039
Alignment:
Q  286 acaccaacaaaatgaaacttgtgctcaagctctttgacaaagttaatagcccctccaattatagaagcttgatcaccctgca 367  Q
    ||||||| ||| || | ||| ||||||||||  || |||||||||||||| || ||||| || || ||||||||||||||||    
T  46922120 acaccaagaaattgtagcttctgctcaagcttcttaacaaagttaatagcacccccaataattgatgcttgatcaccctgca 46922039  T

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