View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4269_low_4 (Length: 425)
Name: NF4269_low_4
Description: NF4269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4269_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 16760741 - 16760335
Alignment:
| Q |
1 |
agggtttctccttacccaattctaaagtcaactttttcagaaaaaatcattgatgaccaaagaaagttcaatttcagtgatggcttcgacatgccacaag |
100 |
Q |
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| T |
16760741 |
agggtttctccttacccaattctaaaatcaactttttcagaaaaaatcattgatgaccaaagaaagttcaatttcagtgatggcttagacatgccacaag |
16760642 |
T |
|
| Q |
101 |
aaattgaagcttcaaaaggtactctcacaatacacattatatacaatatatttg-tcatatttggtcatgttttgttgacttagacatttatttatgaat |
199 |
Q |
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| T |
16760641 |
aaattgaagcttcaaaaggtactctcacaatacacattatatacaatatatttggtcatgttt--------tttgttgacttagacatttatttatgaat |
16760550 |
T |
|
| Q |
200 |
tgagttctaacaagattgaaaaaccctagacttttatatgaaactttgattacaaatattttgtattacatgcaggtgttcatgaattgattggcagaag |
299 |
Q |
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| T |
16760549 |
tgagttctaacaagattgaaaaaccctagacttttatatgaaactttgattacaaatattttgtattacatgcaggtgttcatgaattgattggcagaag |
16760450 |
T |
|
| Q |
300 |
tacttctagtggtaaagtaagtggagacaatgatcatgagagtgaggagaggaagaaggagctggtggagattaaagaaaatgttaccaatgaacatcaa |
399 |
Q |
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| T |
16760449 |
tacttctagtggtaaagtaagtggagacaatgatcatgagagtgaggagaggaagaaggagctggtggagattaaagaaaatgttaccaatgaacatcaa |
16760350 |
T |
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| Q |
400 |
atgcaacctgttcat |
414 |
Q |
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| T |
16760349 |
atgcaacctggtcat |
16760335 |
T |
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