View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4270-Insertion-4 (Length: 142)
Name: NF4270-Insertion-4
Description: NF4270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4270-Insertion-4 |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 136; Significance: 3e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 3e-71
Query Start/End: Original strand, 3 - 142
Target Start/End: Complemental strand, 1426242 - 1426103
Alignment:
| Q |
3 |
aacctgaatgaactcaggacacatagaagatagttctccagagacgccaccttgaacaagagcatgtgcaattccaaaacaagcaaaaaacgtgcataat |
102 |
Q |
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| T |
1426242 |
aacctgaatgaactcaggacacatagaagatagttctccagagacgcccccttgaacaagagcatgtgcaattccaaaacaagcaaaaaacgtgcataat |
1426143 |
T |
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| Q |
103 |
ccgctgaaagttccaattccccctctccctgatgttgcta |
142 |
Q |
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| T |
1426142 |
ccgctgaaagttccaattccccctctccctgatgttgcta |
1426103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 1e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 2816179 - 2816322
Alignment:
| Q |
1 |
ccaacctgaatgaactcaggacacatagaagat--agttctccagagacgccaccttgaacaagagcatgtgcaattccaaaacaagcaaaaaacgtgca |
98 |
Q |
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||||||||||||||||||||||||||| || | ||||||||| | |||||||||||||||| | |||| || ||||||||||||||||||| ||||| |
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| T |
2816179 |
ccaacctgaatgaactcaggacacataaaaaagcaagttctccaaaaacgccaccttgaacaacaacatgcgcgattccaaaacaagcaaaaattgtgca |
2816278 |
T |
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| Q |
99 |
taatccgctgaaagttccaattccccctctccctgatgttgcta |
142 |
Q |
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| T |
2816279 |
taatccaatgaaagttccaatcccccctttccctgatgttgcta |
2816322 |
T |
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