View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4270-Insertion-5 (Length: 95)
Name: NF4270-Insertion-5
Description: NF4270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4270-Insertion-5 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 91; Significance: 1e-44; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 1e-44
Query Start/End: Original strand, 5 - 95
Target Start/End: Complemental strand, 928496 - 928406
Alignment:
| Q |
5 |
cttgggaaccttacaccagcagagaagatggcatcaacttcatagaaagtatagaaagcaagtttctttgttgcaaagcaatatgcattaa |
95 |
Q |
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| T |
928496 |
cttgggaaccttacaccagcagagaagatggcatcaacttcatagaaagtatagaaagcaagtttctttgttgcaaagcaatatgcattaa |
928406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 95
Target Start/End: Complemental strand, 939421 - 939331
Alignment:
| Q |
5 |
cttgggaaccttacaccagcagagaagatggcatcaacttcatagaaagtatagaaagcaagtttctttgttgcaaagcaatatgcattaa |
95 |
Q |
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| T |
939421 |
cttgggaaccatacaccagcaaagaacaaggcatcagcttcattgaaaatataccaaacaagtttctatggtgcaaagcaatatgccttaa |
939331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 924141 - 924054
Alignment:
| Q |
5 |
cttgggaaccttacaccagcagagaagatggcatcaacttcatagaaagtatagaaagcaagtttctttgttgcaaagcaatatgcat |
92 |
Q |
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| T |
924141 |
cttgggaactctacaccagcaaggatgatggcatcaacttcattgaaaatattgctaccaagtttctatggtgcaaagcaatatgcat |
924054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 926176 - 926122
Alignment:
| Q |
8 |
gggaaccttacaccagcagagaagatggcatcaacttcatagaaagtatagaaag |
62 |
Q |
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| T |
926176 |
gggaaccttacaccagcaaagaccaaggcatcaacttcattgaaaatatagaaag |
926122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 935629 - 935547
Alignment:
| Q |
8 |
gggaaccttacaccagcagagaagatggcatcaacttcatagaaagtatagaaagcaagtttctttgttgcaaagcaatatgc |
90 |
Q |
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| T |
935629 |
gggaaccttacaccagcaaagaccaaggcatcaacttcatcaaaaatatggcaggcaagtatctacgttgcaaagcaatatgc |
935547 |
T |
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