View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4270_high_13 (Length: 376)
Name: NF4270_high_13
Description: NF4270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4270_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 51226829 - 51227194
Alignment:
| Q |
1 |
caaaaagtttaaagtcctatgctagcttatggttgacataccgacatga-tgaattgatgatgaaatataagcttctaacaaaacaggtaaatgtattcc |
99 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51226829 |
caaaaagtttaaaggcctatgctagcttatggttgacataccgacatgaatgaattgatgatgaaatataagcttctaacaaaacaggtaaatgtattcc |
51226928 |
T |
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| Q |
100 |
tcaagtaataagaatgatttaaaaagaagagtgcagagtgaaaaataccgtataaggtaatgacttttcaaatgaggaaccataattcctaacccaagta |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51226929 |
tcaagtaataagaatgatttaaaaagaagagtgcagagtgaaaaataccgtataaggtaatgacttttcaaatgaggaaccataattcctaacccaagta |
51227028 |
T |
|
| Q |
200 |
caaaatttgatgcctatttttagctagtagggatccgtataaaaatgatgcagatagctgctcccaacataccaagcttccaacatgacagtagaaaaac |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51227029 |
caaaatttgatgcctatttttagctagtagggatccgtataaaaatgatgcagatagctgctcccaacataccaagcttccaacatgacagtagaaaaac |
51227128 |
T |
|
| Q |
300 |
attagtagtaatttgttattggttcatttaatatgcaaatgttagtcgttagtacgttatgttcat |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51227129 |
attagtagtaatttgttattggttcatttaatatgcaaatgttagtcgttagtacgttatgttcat |
51227194 |
T |
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