View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4270_high_16 (Length: 353)
Name: NF4270_high_16
Description: NF4270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4270_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 310
Target Start/End: Original strand, 45313573 - 45313866
Alignment:
| Q |
11 |
atcatcataggttaatatcaaaaacagtaaccgtctccttctccttatcctccctggaccccctttcatttgcagtttctttctcgaaagaagagcggca |
110 |
Q |
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| T |
45313573 |
atcatcataggttaatatcaaaaacagtaaccgtctccttctccttatcctccccggaccccctttcatttgcagttgctttctcgaaagaagagcggca |
45313672 |
T |
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| Q |
111 |
tcaaatccaacaccggacccttgcgcattctagaaatttccataatctcctcctcttgacttgacttgacttatttccctcaacatcaatcatgttaata |
210 |
Q |
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| T |
45313673 |
tcaaatccaacaccggacccttgcgcattctagaaatttccataatctcctcct-----cttgacttgacttatttccctcaacatcaatcatgttaata |
45313767 |
T |
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| Q |
211 |
tcctcagcatcattttgaacagcttgttgggtttctaacatttttctccaaagaaacaaacccaaatttcaattttttcataggagccttatcaacatta |
310 |
Q |
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| T |
45313768 |
tcctcagcatcattttgaacagcttgttgggtttc-aacatttttctccaaagaaacaaacccaaatttcaattttttcataggagccttatcaacatta |
45313866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 176 - 278
Target Start/End: Complemental strand, 54631729 - 54631625
Alignment:
| Q |
176 |
ttgacttatttccctcaacatcaatcatgttaatatcctcagcatcattttgaacagc---ttgttgggtttctaacatttttctccaaagaaacaaacc |
272 |
Q |
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||||||| |||||||||||||||| |||||||| |||||||||||||||||||||| | |||||||||||| |||||||| |||||||||| |||||| |
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| T |
54631729 |
ttgacttgtttccctcaacatcaaccatgttaacatcctcagcatcattttgaacaacttgttgttgggtttc-aacattttcctccaaagaatcaaacc |
54631631 |
T |
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| Q |
273 |
caaatt |
278 |
Q |
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|||||| |
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| T |
54631630 |
caaatt |
54631625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 54631793 - 54631733
Alignment:
| Q |
46 |
tccttctccttatcctccctggaccccctttcatttgcagtttctttctcgaaagaagagc |
106 |
Q |
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||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
54631793 |
tccttatccttatcctccccagaccccctttcatttgcagtcgctttctcgaaagaagagc |
54631733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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