View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4270_high_20 (Length: 321)

Name: NF4270_high_20
Description: NF4270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4270_high_20
NF4270_high_20
[»] chr1 (1 HSPs)
chr1 (5-302)||(45512231-45512528)


Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 5 - 302
Target Start/End: Original strand, 45512231 - 45512528
Alignment:
Q  5 gagtgagatgaaaaccatcattcaattatttcaatagaaacagagatagaaaacatgggaagatattacaaatgtgtagtacttttggtgttgattgaaa 104  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45512231 gagtgaaatgaaaaccatcattcaattatttcaatagaaacagagatagaaaacatgggaagatattacaaatgtgtagtacttttggtgttgattgaaa 45512330  T
Q  105 ttgcacaaatatgcttgtgtgtaaattcaaacatcccctgtattgaaaaagagaggcaagcccttctcaatttcaaagcatccattgcacatgattcacc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45512331 ttgcacaaatatgcttgtgtgtaaattcaaacatcccctgtattgaaaaagagaggcaagcccttctcaatttcaaagcatccattgcacatgattcacc 45512430  T
Q  205 aaacaagctttcatcatggaaaggcactcactgttgccaatgggaaggcattggttgtgacaatgttactagacatgttgtcaaacttgatctcatga 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45512431 aaacaagctttcatcatggaaaggcactcactgttgccaatgggaaggcattggttgtgacaatgttactagacatgttgtcaaacttgatctcatga 45512528  T

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