View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4270_high_25 (Length: 288)
Name: NF4270_high_25
Description: NF4270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4270_high_25 |
 | |
|
| [»] scaffold0070 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 25628751 - 25629035
Alignment:
| Q |
1 |
aagcaacagaaataaaccttaacaaaatctatcaagttggaatccccaannnnnnnnc-tcaattcaaccctagaaacgagaatttttt-cttagattgn |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
25628751 |
aagcaacagaaataaaccttaacaaaatctatcaagttggaatccccaattttttttcctcaattcaaccctagaaacaagaatttttttcttagattgt |
25628850 |
T |
|
| Q |
99 |
nnnnnngtaagaagttgaactaacctactgaaattgacacattatacttgagatcttaaataaagttcagagaagcacaccattaaaattataaagttat |
198 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
25628851 |
ttttttgtaagaagttgaactaacccactgaaattgacacattatacttgagatcttaaataaagttcagagaagcacaccattagaattataaagttat |
25628950 |
T |
|
| Q |
199 |
atctttttaatcataaataaaaacctttatatatactttcatttcatcttgatatcttctcatacaacgttacttttcttctctc |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
25628951 |
atctttttaatcataaataaaaacctttatatatactttcatttcatcttgatatcttctcatacaacattacttttcttctctc |
25629035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 25326495 - 25326776
Alignment:
| Q |
1 |
aagcaacagaaataaaccttaacaaaatctatcaagttggaatccccaannnnnnnnctcaattcaaccctagaaacgagaattttttcttagattgnnn |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
25326495 |
aagcaacagaaataaaccttaacaaaatctataaagttggaatccccaattttttt-ctcaattcaaccctagaaacaagaattttttcttacattgttt |
25326593 |
T |
|
| Q |
101 |
nnnngtaagaagttgaactaacctactgaaattgacacattatacttgagatcttaaataaagttcagagaagcacaccattaaaattataaagttatat |
200 |
Q |
| |
|
||||||||||||| |||| || ||||||||||||| ||||| |||||||||||||||| ||||||||| |||| | |||||||||||||||| |
|
|
| T |
25326594 |
ttttttaagaagttgaaccaacccaccaaaattgacacattgaacttgtgatcttaaataaagttaagagaagcaaaccaccataattataaagttatat |
25326693 |
T |
|
| Q |
201 |
ctttttaatcataaataaaaacctttatatatactttcatttcatcttgatatcttctcatacaacgttacttttcttctctc |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
25326694 |
ctttttaatcataaataaaaacctttatatatactttcatttcatctctctatcttctcatacaacgttgtttttcttctctc |
25326776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 10 - 269
Target Start/End: Complemental strand, 24895027 - 24894769
Alignment:
| Q |
10 |
aaataaaccttaacaaaatctatcaagttggaatccccaannnnnnnnctcaattcaaccctagaaacgagaatttttt-cttagattgnnnnnnngtaa |
108 |
Q |
| |
|
||||||| ||||||||||||||| ||||| |||||||||| |||||||||||||||||||| |||||||||| ||||||||| ||| |
|
|
| T |
24895027 |
aaataaaacttaacaaaatctataaagttagaatccccaattttttt-ctcaattcaaccctagaaacaagaatttttttcttagattgtttttttgtat |
24894929 |
T |
|
| Q |
109 |
gaagttgaactaacctactgaaattgacacattatacttgagatcttaaataaagttcagagaagcacaccattaaaattataaagttatatctttttaa |
208 |
Q |
| |
|
|||||||||| |||| || ||||||||||| | |||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24894928 |
gaagttgaaccaacccacagaaattgacacgcga-acttgagatcttaaataaagttaagaaaagcacaccaccaaaattataaagttatatctttttaa |
24894830 |
T |
|
| Q |
209 |
tcataaataaaaacctttatatatactttcatttcatcttgatatcttctcatacaacgtt |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24894829 |
tcataaataaaaacctttatatatactttcatttcatctctctatcttctcatacaacgtt |
24894769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 129; Significance: 8e-67; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 58 - 275
Target Start/End: Complemental strand, 31301 - 31084
Alignment:
| Q |
58 |
ctcaattcaaccctagaaacgagaattttttcttagattgnnnnnnngtaagaagttgaactaacctactgaaattgacacattatacttgagatcttaa |
157 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||| ||||||||||||| |||| || |||||||||||||| |||||||||||||| |
|
|
| T |
31301 |
ctcaattcaaccatagaaacaagaattttttcttagattgtttttttttaagaagttgaaccaaccaaccgaaattgacacattcaacttgagatcttaa |
31202 |
T |
|
| Q |
158 |
ataaagttcagagaagcacaccattaaaattataaagttatatctttttaatcataaataaaaacctttatatatactttcatttcatcttgatatcttc |
257 |
Q |
| |
|
|||||||| |||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31201 |
ataaagttaagagaagcacaccaccaaacttataaagttgtatctttttaatcataaataaaaacctttatatatactttcatttcatctctctatcttc |
31102 |
T |
|
| Q |
258 |
tcatacaacgttactttt |
275 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
31101 |
tcatacaacgttgctttt |
31084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University