View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4270_high_26 (Length: 279)

Name: NF4270_high_26
Description: NF4270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4270_high_26
NF4270_high_26
[»] chr6 (13 HSPs)
chr6 (16-223)||(5687556-5687761)
chr6 (116-258)||(5351781-5351921)
chr6 (119-204)||(5334555-5334640)
chr6 (116-192)||(5100548-5100625)
chr6 (116-192)||(5135649-5135726)
chr6 (116-207)||(5242181-5242271)
chr6 (183-268)||(5100650-5100734)
chr6 (183-256)||(5135751-5135823)
chr6 (162-207)||(5255886-5255931)
chr6 (162-207)||(5180554-5180599)
chr6 (138-204)||(5155768-5155832)
chr6 (116-190)||(5398510-5398579)
chr6 (147-207)||(23127164-23127224)
[»] chr3 (4 HSPs)
chr3 (147-206)||(47985118-47985177)
chr3 (147-206)||(47994405-47994464)
chr3 (147-206)||(48003692-48003751)
chr3 (147-206)||(48012977-48013036)


Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 5687761 - 5687556
Alignment:
Q  16 acaagcaacaaaccagactaatgacaggaaatggtatgaaggtaagaagacaattttcaatcttaaagacaaatgttatggttaatgaatcgtcacacag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5687761 acaagcaacaaaccagactaatgacaggaaatggtatgaaggtaagaagacaattttcaatcttaaagacaaatgttatggttaatgaatcgtcacacag 5687662  T
Q  116 caaattagaatctttcaaaactctttgtgaatacaaaaattcaccctggataaaatctagaaactgcagccaaaaatggaaaacaattgttggtaatcac 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5687661 caaattagaatctttcaaaactctttgtgaatacaaaaattcacc--ggataaaatctagaaactgcagccaaaattggaaaacaattgttggtaatcac 5687564  T
Q  216 cataagaa 223  Q
    ||||||||    
T  5687563 cataagaa 5687556  T

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Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 116 - 258
Target Start/End: Complemental strand, 5351921 - 5351781
Alignment:
Q  116 caaattagaatctttcaaaactctttgtgaatacaaaaattcaccctggataaaatctagaaactgcagccaaaaatggaaaacaattgttggtaatcac 215  Q
    |||||||||||||||||  |||||||||||||| ||||||||| | ||||||||||| ||||||| ||||||||||||||||||||||||| |   ||||    
T  5351921 caaattagaatctttcaccactctttgtgaata-aaaaattcaacatggataaaatcaagaaactacagccaaaaatggaaaacaattgttagccgtcac 5351823  T
Q  216 cataagaattgatttttgcttggccgttgctttactatctttc 258  Q
    ||||| ||||||||||||||  ||| |||||||||||||||||    
T  5351822 cataa-aattgatttttgctccgccattgctttactatctttc 5351781  T

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Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 119 - 204
Target Start/End: Complemental strand, 5334640 - 5334555
Alignment:
Q  119 attagaatctttcaaaactctttgtgaatacaaaaattcaccctggataaaatctagaaactgcagccaaaaatggaaaacaattg 204  Q
    ||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  5334640 attagaatctttcaccactctttgtgaatacaaaaattcaccatggataaaatctagaaacttcagccaaaaatggaaaacaattg 5334555  T

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Target: chr6; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 5100548 - 5100625
Alignment:
Q  116 caaattagaatctttcaaaactctttgtgaatacaaaaattcaccctggataaaatctagaaactgcag-ccaaaaat 192  Q
    ||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||| ||| ||||||||    
T  5100548 caaattagaatctttcagaactctttgtgaatacaaaaattcaccaaggataaaatctagaaactacagaccaaaaat 5100625  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 5135649 - 5135726
Alignment:
Q  116 caaattagaatctttcaaaactctttgtgaatacaaaaattcaccctggataaaatctagaaactgcag-ccaaaaat 192  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||  | |||||||||||||||| ||| ||||||||    
T  5135649 caaattagaatctttcagaactctttttgaatacaaaaattcaccaagaataaaatctagaaactacagaccaaaaat 5135726  T

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Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 207
Target Start/End: Original strand, 5242181 - 5242271
Alignment:
Q  116 caaattagaatctttcaaaactctttgtgaatacaaaaattcaccctggataaaatctagaaactgcagccaaaaatggaaaacaattgttg 207  Q
    |||||||||| ||||||  ||||| ||| |||| ||||||||||| ||||||||||||||||||| |||  ||| |||||||||||||||||    
T  5242181 caaattagaaactttcaccactctctgtcaata-aaaaattcaccatggataaaatctagaaactacagaaaaagatggaaaacaattgttg 5242271  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 183 - 268
Target Start/End: Original strand, 5100650 - 5100734
Alignment:
Q  183 agccaaaaatggaaaacaattgttggtaatcaccataagaattgatttttgcttggccgttgctttactatctttcgctgattcat 268  Q
    |||||||||||||||||||||||| | | ||| ||||| |||||||||||||| |||| |||| ||||||||||||  ||||||||    
T  5100650 agccaaaaatggaaaacaattgttagcagtcatcataa-aattgatttttgctcggccattgcattactatctttcattgattcat 5100734  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 5135751 - 5135823
Alignment:
Q  183 agccaaaaatggaaaacaattgttggtaatcaccataagaattgatttttgcttggccgttgctttactatctt 256  Q
    |||||||||||||||||||||||| | | ||| ||||| |||||||||||||| |||| |||||||||||||||    
T  5135751 agccaaaaatggaaaacaattgttagcagtcatcataa-aattgatttttgctcggccattgctttactatctt 5135823  T

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Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 5255886 - 5255931
Alignment:
Q  162 tggataaaatctagaaactgcagccaaaaatggaaaacaattgttg 207  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  5255886 tggataaaatctagaaacttcagccaaaaatggaaaacaattgttg 5255931  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 5180554 - 5180599
Alignment:
Q  162 tggataaaatctagaaactgcagccaaaaatggaaaacaattgttg 207  Q
    ||||||||||||| ||||| ||||| ||||||||||||||||||||    
T  5180554 tggataaaatctaaaaacttcagccgaaaatggaaaacaattgttg 5180599  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 5155768 - 5155832
Alignment:
Q  138 ctttgtgaatacaaaaattcaccctggataaaatctagaaactgcagccaaaaatggaaaacaattg 204  Q
    ||||||||||| ||||||| ||| |||||||  || ||||||| |||||||||||||| ||||||||    
T  5155768 ctttgtgaatataaaaatttaccatggataa--tcaagaaacttcagccaaaaatggagaacaattg 5155832  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 5398579 - 5398510
Alignment:
Q  116 caaattagaatctttcaaaactctttgtgaatacaaaaattcaccctggataaaatctagaaactgcagccaaaa 190  Q
    |||||||||||||||||  |||||    ||||| ||||||||||| |||||||||||||||||||  ||||||||    
T  5398579 caaattagaatctttcaccactct----gaata-aaaaattcaccatggataaaatctagaaacttaagccaaaa 5398510  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 23127164 - 23127224
Alignment:
Q  147 tacaaaaattcaccctggataaaatctagaaactgcagccaaaaatggaaaacaattgttg 207  Q
    |||||||||| ||| || |||||||||||||||| || ||||||||| | || ||||||||    
T  23127164 tacaaaaatttaccatgcataaaatctagaaacttcatccaaaaatgcagaataattgttg 23127224  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 206
Target Start/End: Original strand, 47985118 - 47985177
Alignment:
Q  147 tacaaaaattcaccctggataaaatctagaaactgcagccaaaaatggaaaacaattgtt 206  Q
    |||||||||| ||| || |||||||||||||||| ||||||||| |||||||||||||||    
T  47985118 tacaaaaatttaccatgaataaaatctagaaacttcagccaaaattggaaaacaattgtt 47985177  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 206
Target Start/End: Original strand, 47994405 - 47994464
Alignment:
Q  147 tacaaaaattcaccctggataaaatctagaaactgcagccaaaaatggaaaacaattgtt 206  Q
    |||||||||| ||| || |||||||||||||||| ||||||||| |||||||||||||||    
T  47994405 tacaaaaatttaccatgaataaaatctagaaacttcagccaaaattggaaaacaattgtt 47994464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 206
Target Start/End: Original strand, 48003692 - 48003751
Alignment:
Q  147 tacaaaaattcaccctggataaaatctagaaactgcagccaaaaatggaaaacaattgtt 206  Q
    |||||||||| ||| || |||||||||||||||| ||||||||| |||||||||||||||    
T  48003692 tacaaaaatttaccatgaataaaatctagaaacttcagccaaaattggaaaacaattgtt 48003751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 206
Target Start/End: Original strand, 48012977 - 48013036
Alignment:
Q  147 tacaaaaattcaccctggataaaatctagaaactgcagccaaaaatggaaaacaattgtt 206  Q
    |||||||||| ||| || |||||||||||||||| ||||||||| |||||||||||||||    
T  48012977 tacaaaaatttaccatgaataaaatctagaaacttcagccaaaattggaaaacaattgtt 48013036  T

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