View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4270_high_30 (Length: 261)
Name: NF4270_high_30
Description: NF4270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4270_high_30 |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 13335746 - 13335572
Alignment:
| Q |
18 |
ggcagcaacctctccttcaacaagatgttaacaatatcatcgtcacctccaatactcaattttgaaagagaattcatgtgttggaggccccattcagtta |
117 |
Q |
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| T |
13335746 |
ggcagcaaccgctccttcagcaaggtgttaacaatatcatcgtcacctccaatatacaaacttgaaagagaagtaagatgttggagaccccattcagcta |
13335647 |
T |
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| Q |
118 |
caggccttgatattcccacggatacaatataaattgatcgtagttttggaggtaggaaggctccttcacaaaatg |
192 |
Q |
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| T |
13335646 |
caggcgttgctattctcactgatcgaataaaaatgcttcgtaatttgggaggtaggcaagctcctttacaaaatg |
13335572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 13173870 - 13173696
Alignment:
| Q |
18 |
ggcagcaacctctccttcaacaagatgttaacaatatcatcgtcacctccaatactcaattttgaaagagaattcatgtgttggaggccccattcagtta |
117 |
Q |
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| T |
13173870 |
ggcagcaaccgctccttcagcaaggtgttaacaatatcatcgtaacctcccatatacaaacttgaaagagaagtaagatgttggagaccccattcagcta |
13173771 |
T |
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| Q |
118 |
caggccttgatattcccacggatacaatataaattgatcgtagttttggaggtaggaaggctccttcacaaaatg |
192 |
Q |
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| T |
13173770 |
caggcgttgctattctcactgattcaatataaatacttcgtattttgggaggtaggcaagttcctttacaaaatg |
13173696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 200 - 258
Target Start/End: Original strand, 8585615 - 8585673
Alignment:
| Q |
200 |
atgttcttcggaaagatcataaagagataaatgttcaagagcagtgatgatgtccatct |
258 |
Q |
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| T |
8585615 |
atgttcttcggaaagatcataaagagataaatgttcaagagcagtgagggtgtccatct |
8585673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 13163822 - 13163708
Alignment:
| Q |
18 |
ggcagcaacctctccttcaacaagatgttaacaatatcatcgtcacctccaatactcaattttgaaagagaattcatgtgttggaggccccattcagtta |
117 |
Q |
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| T |
13163822 |
ggcagcaaccgctccttcagcaaggtgttaacaatatcatcgtcacctccaatatacaaacttgaaagcgaagtaagatgttggagaccccattcagcta |
13163723 |
T |
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| Q |
118 |
caggccttgatattc |
132 |
Q |
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| T |
13163722 |
caggcgttgctattc |
13163708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 12131098 - 12131027
Alignment:
| Q |
9 |
agggatataggcagcaacctctccttcaacaagatgttaacaatatcatcgtcacctccaatactcaatttt |
80 |
Q |
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| T |
12131098 |
agggagatgggcagcaactgctccttcaacaaggtgttaacaatatcatcgtcacctccaatagtcaatttt |
12131027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 13346949 - 13346770
Alignment:
| Q |
18 |
ggcagcaacctctccttcaacaagatgttaacaatatc------atcgtcacctccaatactcaattttgaaagagaattcatgtgttggaggccccatt |
111 |
Q |
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| T |
13346949 |
ggcagcaaccgctccttcagcaaggtgttaacaatatcatcgacatcgttacctccaatatacaatcttgaaagagaagtaagatgttggagaccccatc |
13346850 |
T |
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| Q |
112 |
cagttacaggccttgatattcccacggatacaatataaattgatcgtagttttggaggtaggaaggctccttcacaaaat |
191 |
Q |
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| T |
13346849 |
catctacaggcgttgctattctcactgatttaatattaatacttcgtaatttgggaggtaggcaagctcctttacaaaat |
13346770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 133118 - 133292
Alignment:
| Q |
18 |
ggcagcaacctctccttcaacaagatgttaacaatatcatcgtcacctccaatactcaattttgaaagagaattcatgtgttggaggccccattcagtta |
117 |
Q |
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|||||||||| |||||||| |||| |||||||||||||||||| |||||| ||| ||| ||||||||||| | | |||||||| |||||||||| || |
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| T |
133118 |
ggcagcaaccgctccttcagcaaggtgttaacaatatcatcgtaacctcccatatacaaacttgaaagagaagtaagatgttggagaccccattcagcta |
133217 |
T |
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| Q |
118 |
caggccttgatattcccacggatacaatataaattgatcgtagttttggaggtaggaaggctccttcacaaaatg |
192 |
Q |
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| T |
133218 |
caggcgttgctattctcactgattcaatataaatacttcgtattttgggaggtaggcaagttcctttacaaaatg |
133292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 143166 - 143280
Alignment:
| Q |
18 |
ggcagcaacctctccttcaacaagatgttaacaatatcatcgtcacctccaatactcaattttgaaagagaattcatgtgttggaggccccattcagtta |
117 |
Q |
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|||||||||| |||||||| |||| ||||||||||||||||||||||||||||| ||| ||||||| ||| | | |||||||| |||||||||| || |
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| T |
143166 |
ggcagcaaccgctccttcagcaaggtgttaacaatatcatcgtcacctccaatatacaaacttgaaagcgaagtaagatgttggagaccccattcagcta |
143265 |
T |
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| Q |
118 |
caggccttgatattc |
132 |
Q |
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| T |
143266 |
caggcgttgctattc |
143280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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