View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4270_high_34 (Length: 252)
Name: NF4270_high_34
Description: NF4270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4270_high_34 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 43623181 - 43622946
Alignment:
| Q |
1 |
ccaaaatgtgttgcagagcagtaagaaaaagcaaccttttatccatgtaccagatggagaatgactttgatcatgttgtttatggtatcccagaaggtga |
100 |
Q |
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| T |
43623181 |
ccaaaatgtgttgctgagcagtaagaaaaagcaaccttttatccatgtaccagatggagaatgactttgatcatgttgtttatggtatcccagaaggtga |
43623082 |
T |
|
| Q |
101 |
tgatgatgacttaaaagttgtaaatgaggacctttataaaaggcaagggtagctgcaccagccaaacatgccacaatgcctaccaacttagcaatcccag |
200 |
Q |
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| T |
43623081 |
tgatgatgacttaaaagttgtaaatgaggacctttataaaaggcaagggtagctgcaccacccaaacatgccacaatgcctaccaacttagcaatcccag |
43622982 |
T |
|
| Q |
201 |
caaccgtctttattttcaaactttcgatcctgaaat |
236 |
Q |
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| T |
43622981 |
caaccgtctttattttcaaactttcgatcctgaaat |
43622946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 151
Target Start/End: Original strand, 42709448 - 42709498
Alignment:
| Q |
101 |
tgatgatgacttaaaagttgtaaatgaggacctttataaaaggcaagggta |
151 |
Q |
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| T |
42709448 |
tgatgatgacttaaaagttttaattgaggacctttataaaaggcaagggta |
42709498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 42709497 - 42709552
Alignment:
| Q |
181 |
taccaacttagcaatcccagcaaccgtctttattttcaaactttcgatcctgaaat |
236 |
Q |
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| T |
42709497 |
taccagcttagcaatcccagcccccgtctttattttcaaactttcaatcctgaaat |
42709552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 236
Target Start/End: Complemental strand, 38765442 - 38765318
Alignment:
| Q |
112 |
taaaagttgtaaatgaggacctttataaaaggcaagggtagctgcaccagccaaacatgccacaatgcctaccaacttagcaatcccagcaaccgtcttt |
211 |
Q |
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|||||||| || ||||||||||||||||| |||||||| ||||| ||| ||||||||||||||| || ||||||||||| ||||||| | |||||| |
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| T |
38765442 |
taaaagttccaattgaggacctttataaaaagcaagggttgctgctccacccaaacatgccacaacaccagccaacttagcagccccagcagctgtcttt |
38765343 |
T |
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| Q |
212 |
attttcaaactttcgatcctgaaat |
236 |
Q |
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| | ||||| |||||| ||||||| |
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| T |
38765342 |
actctcaaaacttcgattctgaaat |
38765318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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