View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4270_high_35 (Length: 250)
Name: NF4270_high_35
Description: NF4270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4270_high_35 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 49 - 239
Target Start/End: Complemental strand, 13435588 - 13435401
Alignment:
| Q |
49 |
gagttacaaaattgaactaaacacacctcaaaatcaaaacaaaatataaccttgcaaactcatattcatcagggaagttgttgatgttgttgtgtgcttt |
148 |
Q |
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| T |
13435588 |
gagttacaaaattgaactaaacacacctcaaaatcgaaacaaaatataaccttgcaaactcatattcattagggaagttgttg---ttgttgtgtgcttt |
13435492 |
T |
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| Q |
149 |
gggttctttaattgagtgatgaattatgagttcttcagtttcataggaagttgttgtcaattcgattgagagatggatgatgttggtgatg |
239 |
Q |
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| T |
13435491 |
gggttcttcaattgagtgatgaattatgagttcttcagattcataggaagttgttgtcaattcgattgagagatggatgatgttggtgatg |
13435401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 51 - 239
Target Start/End: Original strand, 31034741 - 31034928
Alignment:
| Q |
51 |
gttacaaaattgaactaaacacacctcaaaatcaaaacaaaatataaccttgcaaactcatattcatcagggaagttgttgatgttgttgtgtgctttgg |
150 |
Q |
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| T |
31034741 |
gttacaaaattgaactaaacaaacctcaaaatcgaaacaaaatataaacttgcaaacttagattcatttgggtagt------tgttgttgtgtgttcttg |
31034834 |
T |
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| Q |
151 |
gttctt-taattgagtgatgaattatgagttcttcagtttcataggaa---gttgttgtcaattcgattgagagatggatgatgt-tggtgatg |
239 |
Q |
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| T |
31034835 |
gttcttcaaattgagtgatgaattatgggttcttcaatttcagaggaagttgttgttgtgagttcgattgagagatggatgatgtatggtgatg |
31034928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 49 - 175
Target Start/End: Original strand, 31027839 - 31027960
Alignment:
| Q |
49 |
gagttacaaaattgaactaaacacacctcaaaatcaaaacaaaatataaccttgcaaactcatattcatcagggaagttgttgatgttgttgtgtgcttt |
148 |
Q |
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| T |
31027839 |
gagttacaaaattgaactaaacacacgtcaaaatcgaaacaaaatataaacttgcaaactcagattcattagg------gttgttgttgttgtgtgttct |
31027932 |
T |
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| Q |
149 |
gggttctt-taattgagtgatgaattat |
175 |
Q |
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| T |
31027933 |
gggttcttcaaattgagtgatgaattat |
31027960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 31027747 - 31027819
Alignment:
| Q |
133 |
tgttgttgtgtgctttgggttctttaattgagtgatgaattatgagttcttcagtttcataggaagttgttgt |
205 |
Q |
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| T |
31027747 |
tgttgttgagtgttttgtgttctttaattgagagatgggttctgggttcttcaatttcatatgaagttgttgt |
31027819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 31034648 - 31034720
Alignment:
| Q |
133 |
tgttgttgtgtgctttgggttctttaattgagtgatgaattatgagttcttcagtttcataggaagttgttgt |
205 |
Q |
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| T |
31034648 |
tgttgttgagtattttgtgttctttaattgagagatgggttttgggttcttcaatttcatatgaagttgttgt |
31034720 |
T |
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