View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4270_high_4 (Length: 550)

Name: NF4270_high_4
Description: NF4270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4270_high_4
NF4270_high_4
[»] chr5 (3 HSPs)
chr5 (18-540)||(3289878-3290398)
chr5 (142-194)||(43432490-43432542)
chr5 (55-95)||(39370427-39370467)
[»] chr4 (3 HSPs)
chr4 (132-200)||(7757503-7757571)
chr4 (57-95)||(6986709-6986747)
chr4 (212-245)||(37098092-37098125)
[»] chr2 (6 HSPs)
chr2 (112-251)||(42467690-42467831)
chr2 (50-99)||(14300810-14300859)
chr2 (57-120)||(33624671-33624734)
chr2 (176-241)||(37494927-37494992)
chr2 (64-96)||(21454656-21454688)
chr2 (63-95)||(38501274-38501306)
[»] chr7 (4 HSPs)
chr7 (176-259)||(10407745-10407828)
chr7 (143-241)||(7512593-7512691)
chr7 (61-99)||(12877479-12877517)
chr7 (61-99)||(10407594-10407632)
[»] chr6 (1 HSPs)
chr6 (50-100)||(29246425-29246475)
[»] chr1 (5 HSPs)
chr1 (113-209)||(30066558-30066654)
chr1 (164-235)||(1519764-1519834)
chr1 (111-161)||(460783-460833)
chr1 (174-210)||(11185338-11185374)
chr1 (63-95)||(32630387-32630419)
[»] chr3 (1 HSPs)
chr3 (50-99)||(21143731-21143780)


Alignment Details
Target: chr5 (Bit Score: 452; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 18 - 540
Target Start/End: Original strand, 3289878 - 3290398
Alignment:
Q  18 tttttgtgttgtgattctgttcctttacatgtttaattggatggttaatgaatataacaagttgttgcaactcattaatcataaatcaaacacaattttg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3289878 tttttgtgttgtgattctgttcctttacatgtttaattggatggttaatgaatataacaagttgctgcaactcattaatcataaatcaaacacaattttg 3289977  T
Q  118 aatgtcattaactatgattttttggtgtatatttgaacataaagcgtagttaacgaatatcatgtatattttaacacaatttgaatgattaattaatatc 217  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  3289978 aatgtcattaactacaattttttggtgtatatttgaacataaagcgtagttaacgaatatcatgtatatttgaacacaatttgaatgattaattgatatc 3290077  T
Q  218 atctatatttgaacacttgaaaatcatgattaataacatttagggacgattaatgagttgtgatagattgttatattcannnnnnnnnnnnnnaaagatt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||    
T  3290078 atctatatttgaacacttgaaaatcatgattaataacatttagggacgattaatgagttgtgatagattgttatattca--ttttcttttttaaaagatt 3290175  T
Q  318 gttatattcattaatcaccaccgaatgtaaccacatattttgaatgtgttaatcatccatattgttgtcgaaatttgcttgaaaatgtgtacaaaaatgt 417  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3290176 gttatattcattaatcaccactgaatgtaaccacatattttgaatgtgttaatcatccatattgttgtcgaaatttgcttgaaaatgtgtacaaaaatgt 3290275  T
Q  418 catttttgtattattatcatctctttgttccattgctatgcttctctatgcatgtcttttacttcatatctcatatttccatttgtaattgcaaatgtag 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3290276 catttttgtattattatcatctctttgttccattgctatgcttctctatgcatgtcttttacttcatatctcatatttccatttgtaattgcaaatgtag 3290375  T
Q  518 tttgcataactcttaaccctatg 540  Q
    |||||||||||||||||||||||    
T  3290376 tttgcataactcttaaccctatg 3290398  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 43432490 - 43432542
Alignment:
Q  142 gtgtatatttgaacataaagcgtagttaacgaatatcatgtatattttaacac 194  Q
    ||||||||||||||||| | ||| ||||| ||||||||||||||||| |||||    
T  43432490 gtgtatatttgaacatacatcgtggttaatgaatatcatgtatatttgaacac 43432542  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 39370467 - 39370427
Alignment:
Q  55 tggatggttaatgaatataacaagttgttgcaactcattaa 95  Q
    |||||||||||||||||||||||   |||||||||||||||    
T  39370467 tggatggttaatgaatataacaaagcgttgcaactcattaa 39370427  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 132 - 200
Target Start/End: Complemental strand, 7757571 - 7757503
Alignment:
Q  132 tgattttttggtgtatatttgaacataaagcgtagttaacgaatatcatgtatattttaacacaatttg 200  Q
    ||||||||  ||||||||||||||| ||| ||||||||| |||||||||||||||||||| | ||||||    
T  7757571 tgatttttaagtgtatatttgaacacaaatcgtagttaatgaatatcatgtatattttaagataatttg 7757503  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 95
Target Start/End: Complemental strand, 6986747 - 6986709
Alignment:
Q  57 gatggttaatgaatataacaagttgttgcaactcattaa 95  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  6986747 gatggttaatgaatatgacaaggtgttgcaactcattaa 6986709  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 245
Target Start/End: Complemental strand, 37098125 - 37098092
Alignment:
Q  212 aatatcatctatatttgaacacttgaaaatcatg 245  Q
    |||||||| |||||||||||||||||||||||||    
T  37098125 aatatcatttatatttgaacacttgaaaatcatg 37098092  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 112 - 251
Target Start/End: Complemental strand, 42467831 - 42467690
Alignment:
Q  112 attttgaatgtcattaactatgattttttggtgtatatttgaacataaagcgtagttaacgaatatcatgtatattttaacacaatttgaatgat--taa 209  Q
    |||||||||||||||||| ||||||||   || |||||||||||| |||  || |||||   ||||||||||||||| ||||||||||| ||| |  |||    
T  42467831 attttgaatgtcattaaccatgattttcatgtttatatttgaacacaaattgtggttaaaagatatcatgtatatttgaacacaatttggatggttataa 42467732  T
Q  210 ttaatatcatctatatttgaacacttgaaaatcatgattaat 251  Q
    |  ||||||| ||| || |||||| | ||||||||| |||||    
T  42467731 tggatatcatgtattttagaacacctcaaaatcatggttaat 42467690  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 14300810 - 14300859
Alignment:
Q  50 ttaattggatggttaatgaatataacaagttgttgcaactcattaatcat 99  Q
    |||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  14300810 ttaattagatggttaatgaatattacaagttgttgcaactcattattcat 14300859  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 57 - 120
Target Start/End: Original strand, 33624671 - 33624734
Alignment:
Q  57 gatggttaatgaatataacaagttgttgcaactcattaatcataaatcaaacacaattttgaat 120  Q
    |||||||||||||||||||||  ||| ||||||||||||||||  || ||||||| ||||||||    
T  33624671 gatggttaatgaatataacaatgtgtagcaactcattaatcatttattaaacacatttttgaat 33624734  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 37494992 - 37494927
Alignment:
Q  176 atcatgtatattttaacacaatttgaatgattaattaatatcatctatatttgaacacttgaaaat 241  Q
    ||||||||||||| |||||||||| ||||||||||  ||||| | |||||||||| || |||||||    
T  37494992 atcatgtatatttgaacacaatttaaatgattaatggatatcttatatatttgaaaacctgaaaat 37494927  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 64 - 96
Target Start/End: Complemental strand, 21454688 - 21454656
Alignment:
Q  64 aatgaatataacaagttgttgcaactcattaat 96  Q
    |||||||||||||||||||| ||||||||||||    
T  21454688 aatgaatataacaagttgttacaactcattaat 21454656  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 63 - 95
Target Start/End: Complemental strand, 38501306 - 38501274
Alignment:
Q  63 taatgaatataacaagttgttgcaactcattaa 95  Q
    |||||||||||||||| ||||||||||||||||    
T  38501306 taatgaatataacaaggtgttgcaactcattaa 38501274  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 176 - 259
Target Start/End: Original strand, 10407745 - 10407828
Alignment:
Q  176 atcatgtatattttaacacaatttgaatgattaattaatatcatctatatttgaacacttgaaaatcatgattaataacattta 259  Q
    ||||||||||||  ||||||||||| ||| ||||| |||||||| ||||||||||| | | || || |||||||||||| ||||    
T  10407745 atcatgtatattcaaacacaatttggatggttaataaatatcatgtatatttgaacgcctaaacattatgattaataacgttta 10407828  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 241
Target Start/End: Original strand, 7512593 - 7512691
Alignment:
Q  143 tgtatatttgaacataaagcgtagttaacgaatatcatgtatattttaacacaatttgaatgattaattaatatcatctatatttgaacacttgaaaat 241  Q
    |||||||||||||| ||| ||| ||||| | ||||||  ||||||| ||||||||||  ||| |||||| |||| || ||||||||| || ||||||||    
T  7512593 tgtatatttgaacacaaatcgtggttaagggatatcacatatatttgaacacaatttagatggttaattgatattatgtatatttgaccaattgaaaat 7512691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 12877517 - 12877479
Alignment:
Q  61 gttaatgaatataacaagttgttgcaactcattaatcat 99  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  12877517 gttaatgaatataacaaggtgttgcaactcattaatcat 12877479  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 10407594 - 10407632
Alignment:
Q  61 gttaatgaatataacaagttgttgcaactcattaatcat 99  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  10407594 gttactgaatataacaaggtgttgcaactcattaatcat 10407632  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 29246475 - 29246425
Alignment:
Q  50 ttaattggatggttaatgaatataacaagttgttgcaactcattaatcata 100  Q
    |||| |||||||||||||||||||||||| ||| |||||||||||| ||||    
T  29246475 ttaagtggatggttaatgaatataacaaggtgtcgcaactcattaaccata 29246425  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 209
Target Start/End: Original strand, 30066558 - 30066654
Alignment:
Q  113 ttttgaatgtcattaactatgattttttggtgtatatttgaacataaagcgtagttaacgaatatcatgtatattttaacacaatttgaatgattaa 209  Q
    |||| ||||||||||||||  ||||| |||||||||||| |||| ||   || ||||| | ||||||||||||||| | ||||||||| ||| ||||    
T  30066558 ttttaaatgtcattaactactattttctggtgtatatttaaacaaaacttgttgttaatggatatcatgtatatttgaccacaatttggatggttaa 30066654  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 235
Target Start/End: Original strand, 1519764 - 1519834
Alignment:
Q  164 tagttaacgaatatcatgtatattttaacacaatttgaatgattaattaatatcatctatatttgaacactt 235  Q
    |||||||  |||||||||||||||| ||||||| ||  ||||||||| ||||| || |||||||||||||||    
T  1519764 tagttaagtaatatcatgtatatttgaacacaaatttcatgattaatgaatat-atgtatatttgaacactt 1519834  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 460833 - 460783
Alignment:
Q  111 aattttgaatgtcattaactatgattttttggtgtatatttgaacataaag 161  Q
    ||||||||||||||||||| |  |||||| |||||||||||||||| ||||    
T  460833 aattttgaatgtcattaaccacaatttttaggtgtatatttgaacacaaag 460783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 11185374 - 11185338
Alignment:
Q  174 atatcatgtatattttaacacaatttgaatgattaat 210  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  11185374 atatcatgtatatttgaacacaatttggatgattaat 11185338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 63 - 95
Target Start/End: Original strand, 32630387 - 32630419
Alignment:
Q  63 taatgaatataacaagttgttgcaactcattaa 95  Q
    |||||||||||||||||||| ||||||||||||    
T  32630387 taatgaatataacaagttgtcgcaactcattaa 32630419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 21143731 - 21143780
Alignment:
Q  50 ttaattggatggttaatgaatataacaagttgttgcaactcattaatcat 99  Q
    |||| |||||||||||||||||||||||  |||  |||||||||||||||    
T  21143731 ttaagtggatggttaatgaatataacaaagtgtcacaactcattaatcat 21143780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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