View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4270_high_40 (Length: 244)
Name: NF4270_high_40
Description: NF4270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4270_high_40 |
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Alignment Details
Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 142 - 229
Target Start/End: Complemental strand, 17441252 - 17441165
Alignment:
| Q |
142 |
aattaagaatgtatatacaaaactaaacctaaataaacacacacccaaaccttaaacaactattgataatgacttgttcctcccatgt |
229 |
Q |
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| T |
17441252 |
aattaagaatgtatatacaaaactaaacctaaataaacacacacccaaaccttaaacaactattgataattacttgttcctcccatgt |
17441165 |
T |
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Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 17441346 - 17441272
Alignment:
| Q |
4 |
aagtaagaaaccgaatatatggctaaaacaagtatatttatataacaggattaatgttgaagacacaaggagtgc |
78 |
Q |
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| T |
17441346 |
aagtaagaaaccgaatatatggctaaaacaaatatatttatataacaggattaatgttgaagacacaaggagtgc |
17441272 |
T |
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