View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4270_high_41 (Length: 240)

Name: NF4270_high_41
Description: NF4270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4270_high_41
NF4270_high_41
[»] chr6 (19 HSPs)
chr6 (15-222)||(2938030-2938236)
chr6 (65-222)||(2929879-2930036)
chr6 (65-222)||(2935169-2935327)
chr6 (91-222)||(2927730-2927861)
chr6 (65-222)||(2996726-2996881)
chr6 (65-222)||(2974577-2974732)
chr6 (65-222)||(2983436-2983591)
chr6 (118-222)||(3003188-3003292)
chr6 (118-216)||(2952512-2952610)
chr6 (100-216)||(2658359-2658475)
chr6 (118-208)||(2965111-2965201)
chr6 (65-148)||(2954726-2954807)
chr6 (15-56)||(2930062-2930103)
chr6 (24-60)||(2952697-2952733)
chr6 (23-57)||(2935352-2935386)
chr6 (23-56)||(2965283-2965316)
chr6 (20-56)||(2996664-2996700)
chr6 (23-54)||(2983619-2983650)
chr6 (23-60)||(2974748-2974784)
[»] scaffold0024 (2 HSPs)
scaffold0024 (65-222)||(34595-34750)
scaffold0024 (15-56)||(43637-43678)
[»] chr7 (1 HSPs)
chr7 (65-222)||(3339595-3339750)
[»] chr3 (3 HSPs)
chr3 (101-222)||(49618981-49619102)
chr3 (100-222)||(49614006-49614128)
chr3 (106-222)||(49617653-49617763)


Alignment Details
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 2938236 - 2938030
Alignment:
Q  15 cacagaaaataatgaaaccattgaaacaaacaacgtacattgataaccat--tgaactcaacaatgaaagaaatcaagctaggaggcttgtacaacttgc 112  Q
    |||| ||||||||||||| |||||||||||||||||||||| | ||  ||  ||||||||||||||||||||||||  ||||||||||||||||||||||    
T  2938236 cacacaaaataatgaaac-attgaaacaaacaacgtacattaacaataattatgaactcaacaatgaaagaaatca--ctaggaggcttgtacaacttgc 2938140  T
Q  113 aagacagaacaaactgattgacgtaaagtgagaacaagtagtaagattccagtaatggaagcagcagtttgccaaggagttttgcaataatcacgcctga 212  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |    
T  2938139 aagacagaacaaactgattgaagtaaagtgagaataagtagtaagattccagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctca 2938040  T
Q  213 gagtagcctt 222  Q
    ||||||||||    
T  2938039 gagtagcctt 2938030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 65 - 222
Target Start/End: Complemental strand, 2930036 - 2929879
Alignment:
Q  65 tgaactcaacaatgaaagaaatcaagctaggaggcttgtacaacttgcaagacagaacaaactgattgacgtaaagtgagaacaagtagtaagattccag 164  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||    
T  2930036 tgaactcaacaataaaagaaatcaagctaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagtgagaaaaagtagtaagaatccag 2929937  T
Q  165 taatggaagcagcagtttgccaaggagttttgcaataatcacgcctgagagtagcctt 222  Q
     |||||||||||||||||||||||||||  | ||||||||||||||||||||||||||    
T  2929936 caatggaagcagcagtttgccaaggagtacttcaataatcacgcctgagagtagcctt 2929879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 65 - 222
Target Start/End: Complemental strand, 2935327 - 2935169
Alignment:
Q  65 tgaactcaacaatgaaagaaatcaagctaggaggcttgt---acaacttgcaagacagaacaaactgattgacgtaaagtgagaacaagtagtaagattc 161  Q
    ||||||||||||||||||||||||  |||||||||||||   |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  2935327 tgaactcaacaatgaaagaaatca--ctaggaggcttgttgtacaacttgcaagacagaacaaactgattgaagtaaagtgagaaaaagtagtaagattc 2935230  T
Q  162 cagtaatggaagcagcagtttgccaaggagttttgcaataatcacgcctgagagtagcctt 222  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2935229 cagcaatggaagcagcagtttgccaaggagttttgcaataatcacgcctgagagtagcctt 2935169  T

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Target: chr6; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 91 - 222
Target Start/End: Complemental strand, 2927861 - 2927730
Alignment:
Q  91 ctaggaggcttgtacaacttgcaagacagaacaaactgattgacgtaaagtgagaacaagtagtaagattccagtaatggaagcagcagtttgccaagga 190  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  2927861 ctaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagtgagaacaagtagtaagattcccgcaatggaagcagcagtttgccaagga 2927762  T
Q  191 gttttgcaataatcacgcctgagagtagcctt 222  Q
    ||||||||||||||||||||||||||||||||    
T  2927761 gttttgcaataatcacgcctgagagtagcctt 2927730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 65 - 222
Target Start/End: Original strand, 2996726 - 2996881
Alignment:
Q  65 tgaactcaacaatgaaagaaatcaagctaggaggcttgtacaacttgcaagacagaacaaactgattgacgtaaagtgagaacaagtagtaagattccag 164  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||  |||||||    
T  2996726 tgaactcaacaatgaaagaaatca--ctaggaggcttgtacaacttgcaagacagaacaaactgattgaataaaagtgagaacaagtagtacaattccag 2996823  T
Q  165 taatggaagcagcagtttgccaaggagttttgcaataatcacgcctgagagtagcctt 222  Q
     || ||||||||||| |||||||||||| |||| ||||||||||||||||||||||||    
T  2996824 caaaggaagcagcagcttgccaaggagtcttgccataatcacgcctgagagtagcctt 2996881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 65 - 222
Target Start/End: Complemental strand, 2974732 - 2974577
Alignment:
Q  65 tgaactcaacaatgaaagaaatcaagctaggaggcttgtacaacttgcaagacagaacaaactgattgacgtaaagtgagaacaagtagtaagattccag 164  Q
    ||||||||||||||||||||||||  |||||| |||||||| |||||||||||||||||||||  ||||  || ||||||||||||||| || |||||||    
T  2974732 tgaactcaacaatgaaagaaatca--ctaggatgcttgtactacttgcaagacagaacaaactctttgaattatagtgagaacaagtagaaaaattccag 2974635  T
Q  165 taatggaagcagcagtttgccaaggagttttgcaataatcacgcctgagagtagcctt 222  Q
     ||||||||||||||| ||||||||||| ||||||||||||||||| |||| ||||||    
T  2974634 caatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagagcagcctt 2974577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 65 - 222
Target Start/End: Complemental strand, 2983591 - 2983436
Alignment:
Q  65 tgaactcaacaatgaaagaaatcaagctaggaggcttgtacaacttgcaagacagaacaaactgattgacgtaaagtgagaacaagtagtaagattccag 164  Q
    |||||||||||||||||||||| |  |||||| |||||||| | |||||||||||||||||||| ||||  || |||||||||||||||||||| |||||    
T  2983591 tgaactcaacaatgaaagaaatga--ctaggatgcttgtactatttgcaagacagaacaaactgtttgaattatagtgagaacaagtagtaagactccag 2983494  T
Q  165 taatggaagcagcagtttgccaaggagttttgcaataatcacgcctgagagtagcctt 222  Q
     || |||||||||| ||| ||||||||| |||| |||||||||||||||||| |||||    
T  2983493 caacggaagcagcaattttccaaggagtattgccataatcacgcctgagagtggcctt 2983436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 3003188 - 3003292
Alignment:
Q  118 agaacaaactgattgacgtaaagtgagaacaagtagtaagattccagtaatggaagcagcagtttgccaaggagttttgcaataatcacgcctgagagta 217  Q
    ||||||||||| |||| ||||||||||| |||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3003188 agaacaaactgtttgaagtaaagtgagagcaaggagtaagattccagcaatggaagcagcagtttgccagggagttttgcaataatcacgcctgagagta 3003287  T
Q  218 gcctt 222  Q
    |||||    
T  3003288 gcctt 3003292  T

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Target: chr6; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 118 - 216
Target Start/End: Complemental strand, 2952610 - 2952512
Alignment:
Q  118 agaacaaactgattgacgtaaagtgagaacaagtagtaagattccagtaatggaagcagcagtttgccaaggagttttgcaataatcacgcctgagagt 216  Q
    ||||||||||| |||| ||||||||||| |||| |||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  2952610 agaacaaactgtttgaagtaaagtgagagcaaggagtacgattccagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagt 2952512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 100 - 216
Target Start/End: Original strand, 2658359 - 2658475
Alignment:
Q  100 ttgtacaacttgcaagacagaacaaactgattgacgtaaagtgagaacaagtagtaagattccagtaatggaagcagcagtttgccaaggagttttgcaa 199  Q
    |||||| ||||| |||||||||||||||| ||||  || |||||||| ||||||||||||||||| || ||||||| ||| || |||||||||  |||||    
T  2658359 ttgtactacttgaaagacagaacaaactgtttgaattatagtgagaataagtagtaagattccagcaaaggaagcaccagctttccaaggagtactgcaa 2658458  T
Q  200 taatcacgcctgagagt 216  Q
    ||||||||||| |||||    
T  2658459 taatcacgcctcagagt 2658475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 118 - 208
Target Start/End: Complemental strand, 2965201 - 2965111
Alignment:
Q  118 agaacaaactgattgacgtaaagtgagaacaagtagtaagattccagtaatggaagcagcagtttgccaaggagttttgcaataatcacgc 208  Q
    ||||||||||| ||||  ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||  |||| |||||||||    
T  2965201 agaacaaactgtttgaattaaagtgagaacaagtagtaagattccagcaaaggaagcagcagcttgccaaggagtactgcagtaatcacgc 2965111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 148
Target Start/End: Complemental strand, 2954807 - 2954726
Alignment:
Q  65 tgaactcaacaatgaaagaaatcaagctaggaggcttgtacaacttgcaagacagaacaaactgattgacgtaaagtgagaaca 148  Q
    ||||||||||| ||||||||||||  ||||||||||||||| ||||||||||||||||||| ||||||| ||||||||| ||||    
T  2954807 tgaactcaacattgaaagaaatca--ctaggaggcttgtactacttgcaagacagaacaaattgattgaagtaaagtgataaca 2954726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 2930103 - 2930062
Alignment:
Q  15 cacagaaaataatgaaaccattgaaacaaacaacgtacattg 56  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  2930103 cacacaaaataatgaaaccattgaaacaaacaacgtacattg 2930062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 2952733 - 2952697
Alignment:
Q  24 taatgaaaccattgaaacaaacaacgtacattgataa 60  Q
    |||||||||||||||||||||||||||||||||||||    
T  2952733 taatgaaaccattgaaacaaacaacgtacattgataa 2952697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 57
Target Start/End: Complemental strand, 2935386 - 2935352
Alignment:
Q  23 ataatgaaaccattgaaacaaacaacgtacattga 57  Q
    |||||||||||||||||||||||||||||||||||    
T  2935386 ataatgaaaccattgaaacaaacaacgtacattga 2935352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 2965316 - 2965283
Alignment:
Q  23 ataatgaaaccattgaaacaaacaacgtacattg 56  Q
    ||||||||||||||||||||||||||||||||||    
T  2965316 ataatgaaaccattgaaacaaacaacgtacattg 2965283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 2996664 - 2996700
Alignment:
Q  20 aaaataatgaaaccattgaaacaaacaacgtacattg 56  Q
    ||||||||||||||||||||||||||||| |||||||    
T  2996664 aaaataatgaaaccattgaaacaaacaacttacattg 2996700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 54
Target Start/End: Complemental strand, 2983650 - 2983619
Alignment:
Q  23 ataatgaaaccattgaaacaaacaacgtacat 54  Q
    ||||||||||||||||||||||||||||||||    
T  2983650 ataatgaaaccattgaaacaaacaacgtacat 2983619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 2974784 - 2974748
Alignment:
Q  23 ataatgaaaccattgaaacaaacaacgtacattgataa 60  Q
    |||||||||| |||||||||||||||||||||||||||    
T  2974784 ataatgaaac-attgaaacaaacaacgtacattgataa 2974748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 65 - 222
Target Start/End: Original strand, 34595 - 34750
Alignment:
Q  65 tgaactcaacaatgaaagaaatcaagctaggaggcttgtacaacttgcaagacagaacaaactgattgacgtaaagtgagaacaagtagtaagattccag 164  Q
    ||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||    
T  34595 tgaactcaacaatgaaagaaatca--ctaggaggcttgtactacttgcaagacagaacaaactgattgaagcaaagtgagaacaagtagtaaaattccag 34692  T
Q  165 taatggaagcagcagtttgccaaggagttttgcaataatcacgcctgagagtagcctt 222  Q
     || ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  34693 caacggaagcagcagtttgccaaggagttttgccataatcacgcctgagagaagcctt 34750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 43637 - 43678
Alignment:
Q  15 cacagaaaataatgaaaccattgaaacaaacaacgtacattg 56  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  43637 cacacaaaataatgaaaccattgaaacaaacaacgtacattg 43678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 65 - 222
Target Start/End: Complemental strand, 3339750 - 3339595
Alignment:
Q  65 tgaactcaacaatgaaagaaatcaagctaggaggcttgtacaacttgcaagacagaacaaactgattgacgtaaagtgagaacaagtagtaagattccag 164  Q
    |||||||||||| |||||||||||  ||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||    
T  3339750 tgaactcaacaaagaaagaaatca--ctaggaggcctgtactacttgcaagacagaacaaactgattgaagtaaagtgagaacaagtagtacaattccag 3339653  T
Q  165 taatggaagcagcagtttgccaaggagttttgcaataatcacgcctgagagtagcctt 222  Q
     ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  3339652 caatggaagcagcagtttgccaaggagtattgcaataatcacgcctgagagtggcctt 3339595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 101 - 222
Target Start/End: Complemental strand, 49619102 - 49618981
Alignment:
Q  101 tgtacaacttgcaagacagaacaaactgattgacgtaaagtgagaacaagtagtaagattccagtaatggaagcagcagtttgccaaggagttttgcaat 200  Q
    |||||||||||||||| |||||||||||||||| |||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||  ||| ||    
T  49619102 tgtacaacttgcaagatagaacaaactgattgaagtaaagagagaacaagtagtaaaattccagcaatggaagcagcagtttgccaaggagtactgccat 49619003  T
Q  201 aatcacgcctgagagtagcctt 222  Q
    ||||||||||||||||||||||    
T  49619002 aatcacgcctgagagtagcctt 49618981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 100 - 222
Target Start/End: Complemental strand, 49614128 - 49614006
Alignment:
Q  100 ttgtacaacttgcaagacagaacaaactgattgacgtaaagtgagaacaagtagtaagattccagtaatggaagcagcagtttgccaaggagttttgcaa 199  Q
    ||||||||||||||| || | ||||||||||||| |||||| ||||| ||||||||| ||||||| ||||||||||||||||||||||||| | ||||||    
T  49614128 ttgtacaacttgcaacactgcacaaactgattgaagtaaagagagaataagtagtaaaattccagcaatggaagcagcagtttgccaaggactgttgcaa 49614029  T
Q  200 taatcacgcctgagagtagcctt 222  Q
    |||||||| |||||||| |||||    
T  49614028 taatcacgtctgagagtcgcctt 49614006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 222
Target Start/End: Complemental strand, 49617763 - 49617653
Alignment:
Q  106 aacttgcaagacagaacaaactgattgacgtaaagtgagaacaagtagtaagattccagtaatggaagcagcagtttgccaaggagttttgcaataatca 205  Q
    |||| ||||||||||| ||||||||||| |||||  ||||| ||||||||| ||||||| ||  |||||||| | |||||||  ||   ||||| |||||    
T  49617763 aactcgcaagacagaataaactgattgaagtaaa--gagaataagtagtaaaattccagcaacagaagcagctg-ttgccaactag---tgcaaaaatca 49617670  T
Q  206 cgcctgagagtagcctt 222  Q
     ||||||||||||||||    
T  49617669 tgcctgagagtagcctt 49617653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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