View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4270_high_43 (Length: 238)
Name: NF4270_high_43
Description: NF4270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4270_high_43 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 7800988 - 7800751
Alignment:
| Q |
1 |
ggaacctgagagttgttcaagcgtgatgacaacggaacaaagctgctgataaaggatttcacgaccctggcaaatgaaaatcacaatgtgaacgaaagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7800988 |
ggaacctgagagttgttcaagcgtgatgacaacggaacaaagctgctgataaaggatttcacgaccctggcaaatgaaaatcacaatgtgaacgaaagaa |
7800889 |
T |
|
| Q |
101 |
ctttgatacaggttaattgaagaagaaaatgaattcgttgttaccgtgcaggaaaaaggagaaggcaccgaatcgcagaatgtgaatctttcttgatagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7800888 |
ctttgatacaggttaattgaagaagaaaatgaattcgttgttaccgtgcaggaaaaaggagaaggcaccgaatcgcagaatgtgaatctttcttgatagt |
7800789 |
T |
|
| Q |
201 |
gaagatgcagaaacggtgatggaatttgagtttcaagg |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7800788 |
gaagatgcagaaacggtgatggaatttgagtttcaagg |
7800751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University