View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4270_high_5 (Length: 485)
Name: NF4270_high_5
Description: NF4270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4270_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Complemental strand, 7801930 - 7801450
Alignment:
| Q |
1 |
acaaagacaacattactgagaatgaaaagatttaacgccaacacaacaaaacagattgagcaccaacataacacaacgaaaattgagattgagtgaattg |
100 |
Q |
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| T |
7801930 |
acaaagacaacattactgagaatgaaaagatttaacgccaacacaacaaaacagattgagcaccaacataacacaacgaaaattgagattgagtgaattg |
7801831 |
T |
|
| Q |
101 |
aaaaactgaaaagcatatcaaactccaaaatatcactaattgaattgaaactaacaactacttaggtttcctctactaccaattgacctagttatatatt |
200 |
Q |
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| T |
7801830 |
aaaaactgaaaagcatatcaaactccaaaatatcactaattgaattgaaactaacaactacttaggtttcctctactaccaattgacctagttatatatt |
7801731 |
T |
|
| Q |
201 |
tataccgatcaatctacaagagcaagataagggtataaatttagcataacaaaactcagaaatgaattgattgacaaaaacataatacggaagcaattaa |
300 |
Q |
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| T |
7801730 |
tataccgatcaatctacaagagcaagataagggtataaatttagcataacaaaactcagaaatgaattgattgacaaaaacataatacgaaagcaattaa |
7801631 |
T |
|
| Q |
301 |
gttagatactaccagaaacatctcataaacacaagaaaacaaagttctgtgttagatacaacaaaacttgttatgaaaatctcatcaccaccagaaaaca |
400 |
Q |
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|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||| |
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| T |
7801630 |
gttagatactaccagaaaaatctcataaccacaagaaaacaaagttctgtgttagatactacaaaacttgttatgaaaatctcataaccacaagaaaaca |
7801531 |
T |
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| Q |
401 |
acatctgaagacatgatggttattaaatagtaataccaagtctacacataatcaaccaaaactatgtgttacatactacaa |
481 |
Q |
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|||||||||| |||||||||||||||||||||||| | |||||| |||||||||| |||| |||||||||||||||||||| |
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| T |
7801530 |
acatctgaagccatgatggttattaaatagtaatatccagtctatacataatcaaacaaagctatgtgttacatactacaa |
7801450 |
T |
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