View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4270_high_8 (Length: 446)

Name: NF4270_high_8
Description: NF4270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4270_high_8
NF4270_high_8
[»] chr1 (2 HSPs)
chr1 (1-440)||(17442113-17442553)
chr1 (278-422)||(21545519-21545660)
[»] chr5 (2 HSPs)
chr5 (316-420)||(21943409-21943513)
chr5 (326-373)||(20117121-20117168)
[»] chr7 (4 HSPs)
chr7 (278-373)||(5882036-5882131)
chr7 (316-365)||(8040290-8040339)
chr7 (385-420)||(24578430-24578465)
chr7 (315-360)||(42575233-42575279)
[»] chr4 (3 HSPs)
chr4 (290-355)||(7504292-7504357)
chr4 (380-424)||(3797331-3797375)
chr4 (380-424)||(4216456-4216500)
[»] chr8 (1 HSPs)
chr8 (212-249)||(11154408-11154445)


Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 17442113 - 17442553
Alignment:
Q  1 ccaatcaattagattttgtcatcctactgatttactgattttatttaacagtttaataatccatgtggaaaaattagaaaattcacagatcatgtgtaaa 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  17442113 ccaatcaattagattttgtcatcctactaatttactgattttatttaacagttcaatgatccatgtggaaaaattagaaaattcacagatcatgtgtaaa 17442212  T
Q  101 actaaaggaaatatatctcagctaagatatcaattccaatttagtaacgcaatgatgaattggctattatggt---gtttcttaagcgtcctactttttg 197  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  17442213 actaaaggaaatatatctcagctaagatatcaatgccaatttagtaacgcaatgatgaattggctattatggtggtgtttcttaagcgtcctactttttg 17442312  T
Q  198 tttctttctaaaatataccatttgatcggattatataatctgaaccatgtttttgttatataataagaattgttttggaattcaacaaactgcttgaaat 297  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  17442313 tttctttctaaaatatactatttgatcggattatataatatgaaccatgtttttgttatataataaaaattgttttagaattcaacaaactgcttgaaat 17442412  T
Q  298 aatttcgtgtctttgcatattcaacaatttttcattatataaaataatataaaagacattgagcttatgattatatctcactaaatcattatatagttgt 397  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  17442413 aatttcgtgtctttgcatattcaacaattttttattatataaaataatataaaagacattgagcttatgattata--tcactaaatcattatatagttgt 17442510  T
Q  398 taatgatatacatttctactaatccactcaaggcctatgctac 440  Q
    |||||||||||||||||||||| || || ||||||| ||||||    
T  17442511 taatgatatacatttctactaacccgcttaaggcctgtgctac 17442553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 278 - 422
Target Start/End: Complemental strand, 21545660 - 21545519
Alignment:
Q  278 ttcaacaaactgcttgaaataatttcgtgtctttgcatattcaacaatttttcattatataaaataatataaaagacattgagcttatgattatatctca 377  Q
    |||||||||||||||| | ||||||| ||||| ||   ||||||||| |||||||| |||||| ||||||||||||||  |||||||| ||||||||  |    
T  21545660 ttcaacaaactgcttgcactaatttcatgtctctgtggattcaacaaattttcattgtataaa-taatataaaagacaacgagcttataattatatcaaa 21545562  T
Q  378 ctaaatcattatatagttgttaatgatatacatttctactaatcc 422  Q
     ||  ||||||| ||||||||||||||||||||||| ||||||||    
T  21545561 ata--tcattatgtagttgttaatgatatacatttcaactaatcc 21545519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 316 - 420
Target Start/End: Complemental strand, 21943513 - 21943409
Alignment:
Q  316 attcaacaatttttcattatataaaataatataaaagacattgagcttatgattatatctcactaaatcattatatagttgttaatgatatacatttcta 415  Q
    ||||||||| |||| |||||||||||||||||||||||||  ||| |||| |||||||   |  ||||||| ||||| |||||||| ||||||||||| |    
T  21943513 attcaacaaatttttattatataaaataatataaaagacaacgagtttataattatattaaaaaaaatcataatatatttgttaataatatacatttcaa 21943414  T
Q  416 ctaat 420  Q
    |||||    
T  21943413 ctaat 21943409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 373
Target Start/End: Complemental strand, 20117168 - 20117121
Alignment:
Q  326 ttttcattatataaaataatataaaagacattgagcttatgattatat 373  Q
    |||||| ||||||||||||||||||||| |||||| |||| |||||||    
T  20117168 ttttcaatatataaaataatataaaagagattgaggttataattatat 20117121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 373
Target Start/End: Original strand, 5882036 - 5882131
Alignment:
Q  278 ttcaacaaactgcttgaaataatttcgtgtctttgcatattcaacaatttttcattatataaaataatataaaagacattgagcttatgattatat 373  Q
    ||||||| |||||||| | | ||||| | ||||||   ||||||||| ||||||||||| ||||||||| |||||||| ||||| ||| |||||||    
T  5882036 ttcaacatactgcttgcactgatttcatatctttgtggattcaacaaattttcattatacaaaataatacaaaagacaatgagcatataattatat 5882131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 8040339 - 8040290
Alignment:
Q  316 attcaacaatttttcattatataaaataatataaaagacattgagcttat 365  Q
    |||||||||||||| | ||| ||||||||||||||||||| |||||||||    
T  8040339 attcaacaatttttaaatatgtaaaataatataaaagacaatgagcttat 8040290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 420
Target Start/End: Original strand, 24578430 - 24578465
Alignment:
Q  385 attatatagttgttaatgatatacatttctactaat 420  Q
    ||||||||||||||||||||||||||||| ||||||    
T  24578430 attatatagttgttaatgatatacatttcaactaat 24578465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 360
Target Start/End: Complemental strand, 42575279 - 42575233
Alignment:
Q  315 tattcaacaatttttcatta-tataaaataatataaaagacattgag 360  Q
    ||||||||||||||||| || ||||||||||||||||||||| ||||    
T  42575279 tattcaacaatttttcaataatataaaataatataaaagacaatgag 42575233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 290 - 355
Target Start/End: Original strand, 7504292 - 7504357
Alignment:
Q  290 cttgaaataatttcgtgtctttgcatattcaacaatttttcattatataaaataatataaaagaca 355  Q
    |||||||| ||||| ||||||||   ||| ||||| |||||||||||||||||| |||||||||||    
T  7504292 cttgaaatgatttcatgtctttgtggatttaacaaattttcattatataaaatagtataaaagaca 7504357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 424
Target Start/End: Complemental strand, 3797375 - 3797331
Alignment:
Q  380 aaatcattatatagttgttaatgatatacatttctactaatccac 424  Q
    |||||||||| ||||||||||  ||||||||||| ||||||||||    
T  3797375 aaatcattatgtagttgttaacaatatacatttcaactaatccac 3797331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 424
Target Start/End: Complemental strand, 4216500 - 4216456
Alignment:
Q  380 aaatcattatatagttgttaatgatatacatttctactaatccac 424  Q
    |||||||||| ||||||||||  ||||||||||| ||||||||||    
T  4216500 aaatcattatgtagttgttaacaatatacatttcaactaatccac 4216456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 249
Target Start/End: Complemental strand, 11154445 - 11154408
Alignment:
Q  212 ataccatttgatcggattatataatctgaaccatgttt 249  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  11154445 ataccatttgctcggattatagaatctgaaccatgttt 11154408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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