View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4270_low_1 (Length: 694)

Name: NF4270_low_1
Description: NF4270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4270_low_1
NF4270_low_1
[»] chr2 (6 HSPs)
chr2 (12-568)||(44243760-44244334)
chr2 (597-677)||(44243675-44243760)
chr2 (369-409)||(17117405-17117445)
chr2 (371-409)||(15457768-15457806)
chr2 (371-409)||(21746991-21747029)
chr2 (369-409)||(38985469-38985508)
[»] chr7 (2 HSPs)
chr7 (372-409)||(1366276-1366313)
chr7 (369-409)||(26282292-26282332)
[»] chr8 (1 HSPs)
chr8 (369-409)||(34523714-34523754)
[»] chr5 (5 HSPs)
chr5 (369-409)||(43511885-43511925)
chr5 (371-409)||(3349489-3349527)
chr5 (372-409)||(10591035-10591072)
chr5 (368-405)||(20976245-20976282)
chr5 (369-410)||(41612987-41613028)
[»] chr6 (5 HSPs)
chr6 (369-408)||(1690478-1690517)
chr6 (369-406)||(29308230-29308267)
chr6 (369-409)||(1092801-1092841)
chr6 (371-407)||(7926409-7926445)
chr6 (369-409)||(31861251-31861291)
[»] chr1 (2 HSPs)
chr1 (47-82)||(12541378-12541413)
chr1 (449-501)||(42138109-42138161)
[»] chr4 (1 HSPs)
chr4 (369-409)||(51066071-51066111)
[»] chr3 (1 HSPs)
chr3 (369-409)||(48626789-48626829)


Alignment Details
Target: chr2 (Bit Score: 435; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 12 - 568
Target Start/End: Complemental strand, 44244334 - 44243760
Alignment:
Q  12 atgaaattgcagccattcagacagaagtcattaatcaaaaatatgaatgagaaactcaatcctagattgtaatatggtctgttaaaaatcaataagatca 111  Q
    |||||||||||||||| ||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44244334 atgaaattgcagccatacagactgaagtcattaaccaaaaagatgaatgagaaactcaatcctagattgtaatatggtctattaaaaatcaataagatca 44244235  T
Q  112 tatataggacaagttacttaccaacttaatattccacctaagaataagattcataaaattgaccggtaatgcacaagccatagattagacgattatatgc 211  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44244234 tatacaggacaagttatttaccaacttaatattccacctaagaataagatccataaaattgaccggtaatgcaaaagccatagattagacgattatatgc 44244135  T
Q  212 ttcacgaccacgcctgatctttttaacaagcatttcagaaaataattcaagggctatctctgcagagcttagatatgactgtattatacaacaaactgac 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44244134 ttcacgaccacgcctgatctttttaacaagcatttcagaaaataattcaagggctatctctgcagagcttagatatgactgtattatacaacaaactgac 44244035  T
Q  312 attaacattgtctatagttccaaaatcaccatgtggtgcatgtgtggacaagtatatggcc-tattttaaatagagagctgagccttctatt-------- 402  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| || |||||||||            
T  44244034 attaatattgtctatagttccaaaatcaccatgtggtgcctgtgtggacaagtatatggccttattttaaatagagagccgaaccttctattttatagga 44243935  T
Q  403 ---------tcataggatgggtgatatgacccgatcatcttgactaactgagttaagcaaacatctataaataatctatcatataatatatttatgacta 493  Q
             ||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||    
T  44243934 aagccctcatcacaggatgggtgatatgacctgatcatcttgactaactgagttgagcaaacatctataaataatctataatataatatatttatgatta 44243835  T
Q  494 atttgaatattttgaagtattttttatcccaagattccgaagtctaaaaccctttctttgactacttagccttgt 568  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44243834 atttgaatattttgaagtattttttatcccaagattccgaagtctaaaaccctatctttgactacttagccttgt 44243760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 597 - 677
Target Start/End: Complemental strand, 44243760 - 44243675
Alignment:
Q  597 tttatgaaatttgaaatctgtcatgtggcttgg---aca--ttattatatggactggttggatgacaatttagagatgtaataagt 677  Q
    ||||||||||||| |||||||||||||||||||   |||  |||||||||||||||||||||||||||||||||||||||||||||    
T  44243760 tttatgaaatttggaatctgtcatgtggcttggttgacaatttattatatggactggttggatgacaatttagagatgtaataagt 44243675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 369 - 409
Target Start/End: Complemental strand, 17117445 - 17117405
Alignment:
Q  369 ggcctattttaaatagagagctgagccttctatttcatagg 409  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  17117445 ggcctattttaaatagagagccgagcctcctatttcatagg 17117405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 371 - 409
Target Start/End: Original strand, 15457768 - 15457806
Alignment:
Q  371 cctattttaaatagagagctgagccttctatttcatagg 409  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  15457768 cctattttaaatagagagccgagcctcctatttcatagg 15457806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 371 - 409
Target Start/End: Complemental strand, 21747029 - 21746991
Alignment:
Q  371 cctattttaaatagagagctgagccttctatttcatagg 409  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  21747029 cctattttaaatagagagccgagcctcctatttcatagg 21746991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 369 - 409
Target Start/End: Complemental strand, 38985508 - 38985469
Alignment:
Q  369 ggcctattttaaatagagagctgagccttctatttcatagg 409  Q
    ||||||||||||||||||||| ||||| |||||||||||||    
T  38985508 ggcctattttaaatagagagccgagcc-tctatttcatagg 38985469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 372 - 409
Target Start/End: Original strand, 1366276 - 1366313
Alignment:
Q  372 ctattttaaatagagagctgagccttctatttcatagg 409  Q
    |||||||||||||||||| |||||||||||||||||||    
T  1366276 ctattttaaatagagagccgagccttctatttcatagg 1366313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 369 - 409
Target Start/End: Complemental strand, 26282332 - 26282292
Alignment:
Q  369 ggcctattttaaatagagagctgagccttctatttcatagg 409  Q
    |||||||||||||||| |||| |||||| ||||||||||||    
T  26282332 ggcctattttaaatagtgagccgagcctcctatttcatagg 26282292  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 369 - 409
Target Start/End: Complemental strand, 34523754 - 34523714
Alignment:
Q  369 ggcctattttaaatagagagctgagccttctatttcatagg 409  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  34523754 ggcctattttaaatagagagccgagcctcctatttcatagg 34523714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 369 - 409
Target Start/End: Original strand, 43511885 - 43511925
Alignment:
Q  369 ggcctattttaaatagagagctgagccttctatttcatagg 409  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  43511885 ggcctattttaaatagagagccgagcctcctatttcatagg 43511925  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 371 - 409
Target Start/End: Complemental strand, 3349527 - 3349489
Alignment:
Q  371 cctattttaaatagagagctgagccttctatttcatagg 409  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  3349527 cctattttaaatagagagccgagcctcctatttcatagg 3349489  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 409
Target Start/End: Complemental strand, 10591072 - 10591035
Alignment:
Q  372 ctattttaaatagagagctgagccttctatttcatagg 409  Q
    |||||||||||||||||| |||||| ||||||||||||    
T  10591072 ctattttaaatagagagccgagcctcctatttcatagg 10591035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 405
Target Start/End: Original strand, 20976245 - 20976282
Alignment:
Q  368 tggcctattttaaatagagagctgagccttctatttca 405  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  20976245 tggcctattttaaatagagagccgagcctcctatttca 20976282  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 410
Target Start/End: Original strand, 41612987 - 41613028
Alignment:
Q  369 ggcctattttaaatagagagctgagccttctatttcatagga 410  Q
    ||||||||||||| ||||||| |||||| |||||||||||||    
T  41612987 ggcctattttaaaaagagagcagagcctcctatttcatagga 41613028  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 369 - 408
Target Start/End: Complemental strand, 1690517 - 1690478
Alignment:
Q  369 ggcctattttaaatagagagctgagccttctatttcatag 408  Q
    ||||||||||||||||||||| |||||| |||||||||||    
T  1690517 ggcctattttaaatagagagccgagcctcctatttcatag 1690478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 406
Target Start/End: Complemental strand, 29308267 - 29308230
Alignment:
Q  369 ggcctattttaaatagagagctgagccttctatttcat 406  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  29308267 ggcctattttaaatagagagccgagcctcctatttcat 29308230  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 369 - 409
Target Start/End: Complemental strand, 1092841 - 1092801
Alignment:
Q  369 ggcctattttaaatagagagctgagccttctatttcatagg 409  Q
    ||||||||||||||||||| | |||||| ||||||||||||    
T  1092841 ggcctattttaaatagagaaccgagcctcctatttcatagg 1092801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 371 - 407
Target Start/End: Original strand, 7926409 - 7926445
Alignment:
Q  371 cctattttaaatagagagctgagccttctatttcata 407  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  7926409 cctattttaaataaagagttgagccttctatttcata 7926445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 369 - 409
Target Start/End: Original strand, 31861251 - 31861291
Alignment:
Q  369 ggcctattttaaatagagagctgagccttctatttcatagg 409  Q
    ||||||||||||||||||||  |||||| ||||||||||||    
T  31861251 ggcctattttaaatagagagtcgagcctcctatttcatagg 31861291  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 12541413 - 12541378
Alignment:
Q  47 caaaaatatgaatgagaaactcaatcctagattgta 82  Q
    |||||| |||||||||||||||||||||||||||||    
T  12541413 caaaaacatgaatgagaaactcaatcctagattgta 12541378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 449 - 501
Target Start/End: Original strand, 42138109 - 42138161
Alignment:
Q  449 agcaaacatctataaataatctatcatataatatatttatgactaatttgaat 501  Q
    ||||||||||||||| |||| |||||||| |||||||||  ||||| ||||||    
T  42138109 agcaaacatctataattaatatatcatatcatatatttacaactaaattgaat 42138161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 369 - 409
Target Start/End: Complemental strand, 51066111 - 51066071
Alignment:
Q  369 ggcctattttaaatagagagctgagccttctatttcatagg 409  Q
    ||||||||||||||||||| | |||||| ||||||||||||    
T  51066111 ggcctattttaaatagagaaccgagcctcctatttcatagg 51066071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 369 - 409
Target Start/End: Complemental strand, 48626829 - 48626789
Alignment:
Q  369 ggcctattttaaatagagagctgagccttctatttcatagg 409  Q
    ||||||||||||||||||| | |||||| ||||||||||||    
T  48626829 ggcctattttaaatagagaaccgagcctcctatttcatagg 48626789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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