View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4270_low_11 (Length: 437)
Name: NF4270_low_11
Description: NF4270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4270_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 38115231 - 38115530
Alignment:
| Q |
18 |
aaattagtgttacactaacgtccaataaaacttgaatatttatttcccaatatgcagtttcactgtcacaagaaaacgcgcgcatttcaaattgtgattg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38115231 |
aaattagtgttacactaacgtccaataaaacttgaatatt----tcccaatatgcagtttcactgtcacaagaaaacgcgcgcatttcaaattgtgattg |
38115326 |
T |
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| Q |
118 |
ggaaaataaatcaatatattcaaaactcattcagagttggaatattttgagatcgctgtttcactgtgctacaatccttcacttctctcacaacttggaa |
217 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38115327 |
ggaaaataaagcaatatattcaaaactcattcagagttggaatattttgagatcgctgtttcactgtgctacaatccttcacttctctcacaacttggaa |
38115426 |
T |
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| Q |
218 |
atatcagaaaatctaaccggtaaaatcatctcaaccgtttttcatcttcctcactcttgcattcataataattccaatccatctcaatatcttattaatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38115427 |
atatcagaaaatctaaccggtaaaatcatctcaaccgtttttcatcttcctcactcttgcattcataataattccaatccatctcaatatcttattaatt |
38115526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 312 - 426
Target Start/End: Original strand, 38115551 - 38115665
Alignment:
| Q |
312 |
ttaattcatgttttgatgattaacgaagcttatttctcaatcaattcatcatctatatgatataaccattctgtttcatttctatttggtttttgcattg |
411 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38115551 |
ttaattaatgttttgatgattaacgaagcttatttctcaatcaattcatcatctatatgatataagcattctgtttcatttctatttggtttttgcattg |
38115650 |
T |
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| Q |
412 |
gaattaagttctgat |
426 |
Q |
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| T |
38115651 |
gaattaagttctgat |
38115665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 279
Target Start/End: Original strand, 38159464 - 38159523
Alignment:
| Q |
220 |
atcagaaaatctaaccggtaaaatcatctcaaccgtttttcatcttcctcactcttgcat |
279 |
Q |
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|||| |||| ||||| |||||| |||||||||||||||||| ||||| || ||||||||| |
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| T |
38159464 |
atcaaaaaacctaactggtaaattcatctcaaccgtttttcgtcttcttcgctcttgcat |
38159523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 146 - 320
Target Start/End: Original strand, 49003231 - 49003409
Alignment:
| Q |
146 |
attcagagttggaatattttgagatcgctgtttcactgtgctacaatccttcacttctctcacaacttggaaat-------atcagaaaatctaaccggt |
238 |
Q |
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||||||| |||||| |||| ||||||||| ||||||| ||||||||||||| |||||||||||||||||| | ||||||||| ||||||||| |
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| T |
49003231 |
attcagatttggaaaatttagagatcgctctttcactctgctacaatccttttcttctctcacaacttggagactccaacaatcagaaaacctaaccggt |
49003330 |
T |
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| Q |
239 |
aaaatcatctcaaccgtttttcatcttcctcactcttgcattcataataattccaatccatctcaatatcttattaattcat |
320 |
Q |
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||| |||||||||||||||||||||||| || |||||||||||||||| | ||||||||||||||||| |||||||||| |
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| T |
49003331 |
aaattcatctcaaccgtttttcatcttcttcgctcttgcattcataat---ttgaatccatctcaatatctgattaattcat |
49003409 |
T |
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