View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4270_low_12 (Length: 431)
Name: NF4270_low_12
Description: NF4270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4270_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 47897616 - 47897204
Alignment:
| Q |
1 |
agcataagcaaagaaatcaacgtattttgcttggatatttgaatggacaaaaattaaatgcaggaacataaagaacatacattgcatataagtgttgccc |
100 |
Q |
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| T |
47897616 |
agcataagcaaagaaatcaacgtattttgcttggatatttgaatggacaaaacttaaatgcaggaacataaagaacatacattgcatataagtgttgccc |
47897517 |
T |
|
| Q |
101 |
tttttgaatttgccgcatttcttatgaagatgaaaatataacagtgaaaaagaagggtaaagttgacactcttttaagctatagtatgtccattaatata |
200 |
Q |
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| T |
47897516 |
tttttgaatttgccgcatttcttatgaagatgaaaatataacagtgaaaaagaagggtaaagttgacactcttttaagctatagtatgtccattaatata |
47897417 |
T |
|
| Q |
201 |
gatttcaattttaccaaacacaatcacacaagtttatactttattgttctgtttaaagtgacacgtatcatgagtatcagaactaccagcaactgcnnnn |
300 |
Q |
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| T |
47897416 |
gatttcaattttaccaaacacaatcacacaagtttatactttattgttctgtttaaagtgacacgtatcatgagtatcagaactaccagcaactgc-aaa |
47897318 |
T |
|
| Q |
301 |
nnnngcaaaacagaacagggtgtagaaagctgttagataacatgcgaccaaaggactggtagttattgacccttgaaaaacctttgaaatactatcttag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
47897317 |
aaaagcaaaacagaacagggtgtagaaagctgttagataacatgcgaccaaaggactggtagttgttgatccttgaaaaacctttgaaatactatcttag |
47897218 |
T |
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| Q |
401 |
aaaatgaagcaaaa |
414 |
Q |
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| T |
47897217 |
aaaatgaagcaaaa |
47897204 |
T |
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