View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4270_low_13 (Length: 425)

Name: NF4270_low_13
Description: NF4270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4270_low_13
NF4270_low_13
[»] chr7 (9 HSPs)
chr7 (11-398)||(22359221-22359608)
chr7 (52-395)||(644177-644520)
chr7 (190-397)||(6458252-6458459)
chr7 (18-109)||(47808862-47808953)
chr7 (175-323)||(41242864-41243012)
chr7 (67-316)||(38650530-38650779)
chr7 (282-316)||(31396055-31396089)
chr7 (64-137)||(8751886-8751959)
chr7 (254-339)||(27000141-27000226)
[»] chr5 (7 HSPs)
chr5 (27-395)||(33650437-33650805)
chr5 (211-397)||(20252244-20252430)
chr5 (26-133)||(9195085-9195192)
chr5 (28-84)||(13390908-13390964)
chr5 (67-136)||(20252100-20252169)
chr5 (41-107)||(21824681-21824747)
chr5 (285-317)||(12237531-12237563)
[»] chr4 (13 HSPs)
chr4 (19-397)||(22322955-22323332)
chr4 (197-314)||(42397426-42397543)
chr4 (36-138)||(28708570-28708672)
chr4 (211-396)||(28067375-28067560)
chr4 (175-314)||(39867564-39867703)
chr4 (190-311)||(136559-136680)
chr4 (175-261)||(11820788-11820874)
chr4 (72-138)||(42397301-42397367)
chr4 (41-138)||(14454478-14454575)
chr4 (285-325)||(54846199-54846239)
chr4 (67-138)||(28067633-28067704)
chr4 (282-316)||(19498003-19498037)
chr4 (197-338)||(26892552-26892693)
[»] chr2 (5 HSPs)
chr2 (26-338)||(30516328-30516640)
chr2 (18-383)||(15139860-15140225)
chr2 (190-379)||(45701898-45702087)
chr2 (190-325)||(45468864-45468999)
chr2 (285-338)||(44602663-44602716)
[»] chr6 (9 HSPs)
chr6 (11-397)||(5194712-5195098)
chr6 (11-299)||(31848584-31848872)
chr6 (26-397)||(4103626-4103997)
chr6 (11-131)||(12607785-12607905)
chr6 (185-397)||(5676204-5676416)
chr6 (204-298)||(12607978-12608069)
chr6 (197-314)||(18488965-18489082)
chr6 (41-107)||(16478163-16478229)
chr6 (282-314)||(8234572-8234604)
[»] chr3 (6 HSPs)
chr3 (26-398)||(19668030-19668402)
chr3 (11-120)||(7936897-7937005)
chr3 (64-127)||(10751669-10751732)
chr3 (249-314)||(18378276-18378341)
chr3 (41-138)||(30044661-30044758)
chr3 (67-147)||(12214922-12215002)
[»] chr8 (6 HSPs)
chr8 (28-138)||(29934104-29934214)
chr8 (43-104)||(39919874-39919935)
chr8 (197-338)||(39920028-39920169)
chr8 (88-138)||(8305226-8305276)
chr8 (36-138)||(9017475-9017577)
chr8 (67-147)||(21313201-21313281)
[»] scaffold0155 (1 HSPs)
scaffold0155 (190-272)||(32316-32398)
[»] chr1 (1 HSPs)
chr1 (285-314)||(14794715-14794744)


Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 11 - 398
Target Start/End: Original strand, 22359221 - 22359608
Alignment:
Q  11 cacagacattgtcaataggttggataacatgacgacggaccaaatttgaacgggttggaattctatcttgaagaagtcgccaagcaaacaaagacacttt 110  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22359221 cacagacattgtcaataggttgaataacatgacgacgaaccaaatttgaacgggttggaattctatcttgaagaagtcgccaagcaaacagagacacttt 22359320  T
Q  111 tgtaggaactaatttgtgtcacacatcattaagaacaccaaccgccacttgttcatttgaagtggttaggtaatgatacgtcccactaaccgtatagcca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||| |||||||||||  |||||||||||||||||||||||||    
T  22359321 tgtaggaactaatttgtgtcacacatcattaagaacaccaaccaccacctgttcatctgaaatggttaggtaacaatacgtcccactaaccgtatagcca 22359420  T
Q  211 tgaatcggatcaagcaaccaccgccactagtcctatatattttcctgcaaaccaacgttatttaacagtgaaacacactccctcacactctcttcctccc 310  Q
    |||||||||||||||||||||| |||||||||||  ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  22359421 tgaatcggatcaagcaaccaccaccactagtcctgaatattttcctgcaaaacaatgttatttaacagtgaaacacactccctcacactctcttcctccc 22359520  T
Q  311 aagccagcaatcgacacctccaaacccatccatattcgcctacctcccaccccattctcgccatctcctccactaaacaatccttatt 398  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  22359521 aagccagcaatcgacgcctccaaacccacccatattcgcctacctcccaccccattctcgccatctcctccaccaaacaatccttatt 22359608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 52 - 395
Target Start/End: Complemental strand, 644520 - 644177
Alignment:
Q  52 aaatttgaacgggttggaattctatcttgaagaagtcgccaagcaaacaaagacacttttgtaggaactaatttgtgtcacacatcattaagaacaccaa 151  Q
    ||||||||||| ||||||||||||||||||| ||  | ||||||||| | ||| || ||   |||||||||||| || |||||||| ||||| ||||||     
T  644520 aaatttgaacgagttggaattctatcttgaaaaatacaccaagcaaaaagagatacattaaaaggaactaatttatgccacacatccttaagtacaccag 644421  T
Q  152 ccgccacttgttcatttgaagtggttaggtaatgatacgtcccactaaccgtatagccatgaatcggatcaagcaaccaccgccactagtcctatatatt 251  Q
    |||||||||| |||| |  |||||||||  |  |||| |   |||  |||||||||||||||||||||||||||||||||||||||| |||||  || ||    
T  644420 ccgccacttgatcatctatagtggttagaaagcgataagcatcacagaccgtatagccatgaatcggatcaagcaaccaccgccactggtcctgaatgtt 644321  T
Q  252 ttcctgcaaaccaacgttatttaacagtgaaacacactccctcacactctcttcctcccaagccagcaatcgacacctccaaacccatccatattcgcct 351  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||| || ||||| || |||| ||| |||| |||| | ||||||||| | ||| ||    
T  644320 ttcctgcaaaacaacgttatttaacagagaaacacactccctcacactatcctcctctcacgccatcaaacgacgcctcaacacccatccagaatcgtct 644221  T
Q  352 acctcccaccccattctcgccatctcctccactaaacaatcctt 395  Q
    ||| |||||||||  | ||||||||||||||| |||||||||||    
T  644220 accccccaccccaaacgcgccatctcctccaccaaacaatcctt 644177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 190 - 397
Target Start/End: Complemental strand, 6458459 - 6458252
Alignment:
Q  190 gtcccactaaccgtatagccatgaatcggatcaagcaaccaccgccactagtcctatatattttcctgcaaaccaacgttatttaacagtgaaacacact 289  Q
    |||||||||||||  || |||||||| |||||||  ||||| ||||| | ||| | || ||||| |||||||  |||||||||||| |     |||||||    
T  6458459 gtcccactaaccgagtaaccatgaataggatcaaaaaaccaacgccagtggtcttgtaaatttttctgcaaaataacgttatttaataaattcacacact 6458360  T
Q  290 ccctcacactctcttcctcccaagccagcaatcgacacctccaaacccatccatattcgcctacctcccaccccattctcgccatctcctccactaaaca 389  Q
    |||||||||| || ||||||||||||| ||| |||   | |||   ||| |||  | ||||| |||||||||||||||||||||| |||||||| |||||    
T  6458359 ccctcacactatcctcctcccaagccaacaaccgatgtcgccatctccacccacctccgccttcctcccaccccattctcgccatatcctccaccaaaca 6458260  T
Q  390 atccttat 397  Q
    ||||||||    
T  6458259 atccttat 6458252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 47808953 - 47808862
Alignment:
Q  18 attgtcaataggttggataacatgacgacggaccaaatttgaacgggttggaattctatcttgaagaagtcgccaagcaaacaaagacactt 109  Q
    ||||||||||||||||| |||||| || || |||||||| ||    |||||||||||||||||||| || ||||||||||||| ||| ||||    
T  47808953 attgtcaataggttggagaacatgtcggcgcaccaaattagatttagttggaattctatcttgaaggagacgccaagcaaacagagatactt 47808862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 175 - 323
Target Start/End: Original strand, 41242864 - 41243012
Alignment:
Q  175 gttaggtaatgatacgtcccactaaccgtatagccatgaatcggatcaagcaaccaccgccactagtcctatatattttcctgcaaaccaacgttattta 274  Q
    |||||| || |||||||||||| |||||| || ||||| || |||||||| | ||||| |||  |||||| |||||  ||||||||| |||| ||| | |    
T  41242864 gttaggaaacgatacgtcccacgaaccgtgtaaccatgtataggatcaagaagccacctccaaaagtcctgtatatgatcctgcaaaacaacattactca 41242963  T
Q  275 acagtgaaacacactccctcacactctcttcctcccaagccagcaatcg 323  Q
    |||  | |  ||||||||| ||||| ||||||||||| |||| ||||||    
T  41242964 acatagcactacactccctgacactttcttcctcccacgccaacaatcg 41243012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 316
Target Start/End: Complemental strand, 38650779 - 38650530
Alignment:
Q  67 ggaattctatcttgaagaagtcgccaagcaaacaaagacacttttgtaggaactaatttgtgtcacacatcattaagaacaccaaccgccacttgttcat 166  Q
    |||||| | |||||||  || ||||||||||| | ||| || ||||| ||||| | |||||| ||||||||| |||  |||||| | ||||| ||||| |    
T  38650779 ggaattttgtcttgaatgaggcgccaagcaaaaagagaaacctttgtcggaaccagtttgtgccacacatcaataactacaccatcagccacctgttcgt 38650680  T
Q  167 ttgaagtggttaggtaatgatacgtcccactaaccgtatagccatgaatcggatcaagcaaccaccgccactagtcctatatattttcctgcaaaccaac 266  Q
        ||| |||||| || |||| || || | |||||  ||||||||||  |||||||| ||| ||||||| | |||||   |||   |||||||| ||||    
T  38650679 caatagttgttaggaaacgataagttccgcgaaccgagtagccatgaacaggatcaagtaactaccgccaatggtcctcagtatcaacctgcaaaacaac 38650580  T
Q  267 gttatttaacagtgaaacacactccctcacactctcttcctcccaagcca 316  Q
    ||| |  ||||  |  |||||||||||||||||||| |||||||||||||    
T  38650579 gttttccaacaaagtgacacactccctcacactctcctcctcccaagcca 38650530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 31396055 - 31396089
Alignment:
Q  282 aacacactccctcacactctcttcctcccaagcca 316  Q
    ||||||||||||||||||||| |||||||||||||    
T  31396055 aacacactccctcacactctcctcctcccaagcca 31396089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 8751959 - 8751886
Alignment:
Q  64 gttggaattctatcttgaagaagtcgccaagcaaacaaagacacttttgtaggaactaatttgtgtcacacatc 137  Q
    |||||||||||||||||||| |  |||||||| || ||||| ||||| || ||||| | |||||| ||||||||    
T  8751959 gttggaattctatcttgaaggacacgccaagcgaaaaaagaaactttagtcggaaccagtttgtgccacacatc 8751886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 339
Target Start/End: Complemental strand, 27000226 - 27000141
Alignment:
Q  254 cctgcaaaccaacgttatttaacagtgaaacacactccctcacactctcttcctcccaagccagcaatcgacacctccaaacccat 339  Q
    |||||||| ||||||||| ||||||| ||   |||||||||||||| || |||||||||| || ||| ||||  ||||| ||||||    
T  27000226 cctgcaaaacaacgttatgtaacagtaaagtgcactccctcacactatcctcctcccaagacaacaagcgacgtctccacacccat 27000141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 173; Significance: 7e-93; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 27 - 395
Target Start/End: Complemental strand, 33650805 - 33650437
Alignment:
Q  27 aggttggataacatgacgacggaccaaatttgaacgggttggaattctatcttgaagaagtcgccaagcaaacaaagacacttttgtaggaactaatttg 126  Q
    |||||| | |||||| ||||| || ||||||||||| |||| |||||| ||||||||||| ||||||||||||||||| ||||||| ||| |||| ||||    
T  33650805 aggttgaagaacatgtcgacgaactaaatttgaacgtgttgaaattctgtcttgaagaagacgccaagcaaacaaagatacttttgaagggactagtttg 33650706  T
Q  127 tgtcacacatcattaagaacaccaaccgccacttgttcatttgaagtggttaggtaatgatacgtcccactaaccgtatagccatgaatcggatcaagca 226  Q
    || |||||||| |||||||||||   ||||||||| ||||||| |||||||||  || |||| ||||||||||||||| ||||||||| |||||||||||    
T  33650705 tgccacacatccttaagaacaccggtcgccacttgatcatttgtagtggttagaaaacgataagtcccactaaccgtacagccatgaagcggatcaagca 33650606  T
Q  227 accaccgccactagtcctatatattttcctgcaaaccaacgttatttaacagtgaaacacactccctcacactctcttcctcccaagccagcaatcgaca 326  Q
    ||||||||||| ||||||  || |||| ||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||  ||| ||| || |     
T  33650605 accaccgccaccagtcctgaatgtttttctgcaaaacaacgttatttaacagagaaacacactccctcacactatcttcctcccacaccatcaaacggcg 33650506  T
Q  327 cctccaaacccatccatattcgcctacctcccaccccattctcgccatctcctccactaaacaatcctt 395  Q
    |||||| ||||| ||| |  ||||||||||||||||||  | ||||||||||||||| |||||||||||    
T  33650505 cctccacacccacccaaaaccgcctacctcccaccccaaacgcgccatctcctccaccaaacaatcctt 33650437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 211 - 397
Target Start/End: Original strand, 20252244 - 20252430
Alignment:
Q  211 tgaatcggatcaagcaaccaccgccactagtcctatatattttcctgcaaaccaacgttatttaacagtgaaacacactccctcacactctcttcctccc 310  Q
    |||| |||||||| |||||||||||||| ||| |   |||| ||||||||| ||| |||| | ||||     |||||||||||||||||||| |||||||    
T  20252244 tgaaccggatcaatcaaccaccgccactggtcttgggtattgtcctgcaaaacaatgttagtcaacaaccctacacactccctcacactctcctcctccc 20252343  T
Q  311 aagccagcaatcgacacctccaaacccatccatattcgcctacctcccaccccattctcgccatctcctccactaaacaatccttat 397  Q
    | || | ||| |||| |||||||||||| ||| |  | ||| ||||||||||   |||| |||| ||||||||| |||| |||||||    
T  20252344 atgctaacaaacgacgcctccaaacccacccaaagcctccttcctcccacccggctctcaccatatcctccactgaacactccttat 20252430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 133
Target Start/End: Original strand, 9195085 - 9195192
Alignment:
Q  26 taggttggataacatgacgacggaccaaatttgaacgggttggaattctatcttgaagaagtcgccaagcaaacaaagacacttttgtaggaactaattt 125  Q
    |||||||||||||||| || || ||||||||||| |  || |||||||||||||  |  || ||||||||||| | ||| |||||||||||||| |||||    
T  9195085 taggttggataacatgtcgtcgcaccaaatttgatcttgtcggaattctatctttcaagagacgccaagcaaagagagaaacttttgtaggaaccaattt 9195184  T
Q  126 gtgtcaca 133  Q
    ||| ||||    
T  9195185 gtgccaca 9195192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 13390908 - 13390964
Alignment:
Q  28 ggttggataacatgacgacggaccaaatttgaacgggttggaattctatcttgaaga 84  Q
    ||||| |||||||||||||| ||||||||||| |  |||||||||||||||||||||    
T  13390908 ggttgaataacatgacgacgcaccaaatttgatctcgttggaattctatcttgaaga 13390964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 136
Target Start/End: Original strand, 20252100 - 20252169
Alignment:
Q  67 ggaattctatcttgaagaagtcgccaagcaaacaaagacacttttgtaggaactaatttgtgtcacacat 136  Q
    ||||||||||||||||| |  ||||| ||||||||||| ||||||| |||||| ||||| || |||||||    
T  20252100 ggaattctatcttgaagtaaacgccacgcaaacaaagaaacttttgaaggaaccaatttatgccacacat 20252169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 21824747 - 21824681
Alignment:
Q  41 gacgacggaccaaatttgaacgggttggaattctatcttgaagaagtcgccaagcaaacaaagacac 107  Q
    ||||||| ||||||||||  || || | || ||||||||||||||| ||||||||||||| ||||||    
T  21824747 gacgacgcaccaaatttgcgcgagtagcaactctatcttgaagaagacgccaagcaaacacagacac 21824681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 12237563 - 12237531
Alignment:
Q  285 acactccctcacactctcttcctcccaagccag 317  Q
    |||||||||||||||||| ||||||||||||||    
T  12237563 acactccctcacactctcctcctcccaagccag 12237531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 163; Significance: 6e-87; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 19 - 397
Target Start/End: Original strand, 22322955 - 22323332
Alignment:
Q  19 ttgtcaataggttggataacatgacgacggaccaaatttgaacgggttggaattctatcttgaagaagtcgccaagcaaacaaagacacttttgtaggaa 118  Q
    ||||| |||||||||| |||||| ||||| ||||||||||| |  |||||||||||||||||||| || |||||| |||||||||| |||||||||||||    
T  22322955 ttgtcgataggttggaaaacatgtcgacgcaccaaatttgatcttgttggaattctatcttgaaggagacgccaatcaaacaaagatacttttgtaggaa 22323054  T
Q  119 ctaatttgtgtcacacatcattaagaacaccaaccgccacttgttcatttgaagtggttaggtaatgatacgtcccactaaccgtatagccatgaatcgg 218  Q
    ||| |||||| ||||||| |||||  | |||| | ||||| ||||||| |  |||||||||| || |||| ||||||||||||  ||||||||||||| |    
T  22323055 ctagtttgtgccacacattattaaccaaaccatcagccacctgttcatctatagtggttaggaaacgataagtcccactaacctaatagccatgaatcag 22323154  T
Q  219 atcaagcaaccaccgccactagtcctatatattttcctgcaaaccaacgttatttaacagtgaaacacactccctcacactctcttcctcccaagccagc 318  Q
    |||||||||||||||||| | |||||  ||  ||||||||||| ||||||||||||| || | | |||||||||||||||| ||||||||||| |||| |    
T  22323155 atcaagcaaccaccgccaatggtcctgaatgctttcctgcaaaacaacgttatttaa-agagtagcacactccctcacactatcttcctcccacgccatc 22323253  T
Q  319 aatcgacacctccaaacccatccatattcgcctacctcccaccccattctcgccatctcctccactaaacaatccttat 397  Q
    || |||| |||||||||||| ||||   ||||| |||||||||||| ||||||||| |||||||| |||||||||||||    
T  22323254 aaacgacgcctccaaacccacccattcccgccttcctcccaccccactctcgccatttcctccaccaaacaatccttat 22323332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 197 - 314
Target Start/End: Original strand, 42397426 - 42397543
Alignment:
Q  197 taaccgtatagccatgaatcggatcaagcaaccaccgccactagtcctatatattttcctgcaaaccaacgttatttaacagtgaaacacactccctcac 296  Q
    ||||||||||||||||||| ||||| || |||||||||||||  ||||  ||||| ||||||||| ||| ||||||||||||    ||||||||||||||    
T  42397426 taaccgtatagccatgaataggatcgagtaaccaccgccactgatcctgaatattatcctgcaaaacaatgttatttaacagattgacacactccctcac 42397525  T
Q  297 actctcttcctcccaagc 314  Q
    ||  || |||||||||||    
T  42397526 accttcctcctcccaagc 42397543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 36 - 138
Target Start/End: Complemental strand, 28708672 - 28708570
Alignment:
Q  36 aacatgacgacggaccaaatttgaacgggttggaattctatcttgaagaagtcgccaagcaaacaaagacacttttgtaggaactaatttgtgtcacaca 135  Q
    |||||||||||| |||||||| || |  || |||||||||||||||||||| |||||||  |||||||| ||||| | |||||| |||||||| ||||||    
T  28708672 aacatgacgacgcaccaaattagatctcgtcggaattctatcttgaagaagacgccaagttaacaaagaaactttagaaggaaccaatttgtgccacaca 28708573  T
Q  136 tca 138  Q
    |||    
T  28708572 tca 28708570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 211 - 396
Target Start/End: Complemental strand, 28067560 - 28067375
Alignment:
Q  211 tgaatcggatcaagcaaccaccgccactagtcctatatattttcctgcaaaccaacgttatttaacagtgaaacacactccctcacactctcttcctccc 310  Q
    ||||||||||||||||||||||||||||  || |   |||| ||||||||| ||| |||||||||||     ||||||||||| |||||||| || ||||    
T  28067560 tgaatcggatcaagcaaccaccgccactgatcttgggtattatcctgcaaaacaaagttatttaacatccctacacactcccttacactctcctcttccc 28067461  T
Q  311 aagccagcaatcgacacctccaaacccatccatattcgcctacctcccaccccattctcgccatctcctccactaaacaatcctta 396  Q
    | || | |||||||| |||||||||||| ||  |  | ||| ||||||||||   ||||||||| ||||||||  |||| ||||||    
T  28067460 atgctaacaatcgacgcctccaaacccaccccaagcctccttcctcccacccagctctcgccatatcctccaccgaacactcctta 28067375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 175 - 314
Target Start/End: Complemental strand, 39867703 - 39867564
Alignment:
Q  175 gttaggtaatgatacgtcccactaaccgtatagccatgaatcggatcaagcaaccaccgccactagtcctatatattttcctgcaaaccaacgttattta 274  Q
    |||||| |||| || ||||||||||||| ||| |||||||| |||||||||||||| ||||| | ||||| || ||| |||||||||  || |||||| |    
T  39867703 gttaggaaatggtaagtcccactaaccgaatatccatgaataggatcaagcaaccaacgccagttgtcctgtaaattatcctgcaaaataatgttattca 39867604  T
Q  275 acagtgaaacacactccctcacactctcttcctcccaagc 314  Q
    | |     ||||||||||||||||| || |||||||||||    
T  39867603 ataaattcacacactccctcacactatcctcctcccaagc 39867564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 190 - 311
Target Start/End: Original strand, 136559 - 136680
Alignment:
Q  190 gtcccactaaccgtatagccatgaatcggatcaagcaaccaccgccactagtcctatatattttcctgcaaaccaacgttatttaacagtgaaacacact 289  Q
    ||||||| ||||| ||| ||||| | ||||||||||| ||||| |||  ||||||| |||||  ||||||||   |||||||| ||||  | | ||||||    
T  136559 gtcccacgaaccgaataaccatgtaacggatcaagcagccacctccaagagtcctagatattaacctgcaaaatgacgttattcaacaaagtagcacact 136658  T
Q  290 ccctcacactctcttcctccca 311  Q
    ||||||||||||| ||||||||    
T  136659 ccctcacactctcctcctccca 136680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 261
Target Start/End: Complemental strand, 11820874 - 11820788
Alignment:
Q  175 gttaggtaatgatacgtcccactaaccgtatagccatgaatcggatcaagcaaccaccgccactagtcctatatattttcctgcaaa 261  Q
    |||||| |||| || |||||||||||||  |||||||| || |||| ||||||||| ||||| | ||||| || |||||||||||||    
T  11820874 gttaggaaatggtaagtcccactaaccgagtagccatgtataggatgaagcaaccaacgccagtggtcctctaaattttcctgcaaa 11820788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 42397301 - 42397367
Alignment:
Q  72 tctatcttgaagaagtcgccaagcaaacaaagacacttttgtaggaactaatttgtgtcacacatca 138  Q
    ||||||||||||||| |||||||||||||||||||| || | |||||| | ||| || |||||||||    
T  42397301 tctatcttgaagaaggcgccaagcaaacaaagacaccttggaaggaacaagtttatgccacacatca 42397367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 138
Target Start/End: Original strand, 14454478 - 14454575
Alignment:
Q  41 gacgacggaccaaatttgaacgggttggaattctatcttgaagaagtcgccaagcaaacaaagacacttttgtaggaactaatttgtgtcacacatca 138  Q
    ||||||| ||||||||||  || || | || ||||||||||||||| ||||||||||||| |||||| || | ||||||  |||| || |||||||||    
T  14454478 gacgacgcaccaaatttgcgcgagtagcaactctatcttgaagaagacgccaagcaaacacagacaccttggaaggaacacatttatgccacacatca 14454575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 54846199 - 54846239
Alignment:
Q  285 acactccctcacactctcttcctcccaagccagcaatcgac 325  Q
    |||||||||||||||||| ||||||||||||| ||||||||    
T  54846199 acactccctcacactctcctcctcccaagccaacaatcgac 54846239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 138
Target Start/End: Complemental strand, 28067704 - 28067633
Alignment:
Q  67 ggaattctatcttgaagaagtcgccaagcaaacaaagacacttttgtaggaactaatttgtgtcacacatca 138  Q
    ||||||||||||||||| |  ||||||||||| || |||||||||| |||||| || || || |||||||||    
T  28067704 ggaattctatcttgaagtaaacgccaagcaaataacgacacttttgaaggaaccaacttatgccacacatca 28067633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 316
Target Start/End: Original strand, 19498003 - 19498037
Alignment:
Q  282 aacacactccctcacactctcttcctcccaagcca 316  Q
    ||||||||||||||||||||| |||||||||||||    
T  19498003 aacacactccctcacactctcctcctcccaagcca 19498037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 338
Target Start/End: Complemental strand, 26892693 - 26892552
Alignment:
Q  197 taaccgtatagccatgaatcggatcaagcaaccaccgccactagtcctatatattttcctgcaaaccaacgttatttaacagtgaaacacactccctcac 296  Q
    |||| |||||| || |||| |||||||| |||||||||||||  ||||  ||||| ||||||||| | | |||||||||||     |||||||||||| |    
T  26892693 taactgtatagtcaagaataggatcaagtaaccaccgccacttatcctgaatattatcctgcaaaacgatgttatttaacaaattgacacactccctcgc 26892594  T
Q  297 actctcttcctcccaagccagcaatcgacacctccaaaccca 338  Q
    ||  || |||||||| ||||  || |||| |||||| |||||    
T  26892593 accttcctcctcccaggccaataaacgacgcctccacaccca 26892552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 125; Significance: 3e-64; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 26 - 338
Target Start/End: Original strand, 30516328 - 30516640
Alignment:
Q  26 taggttggataacatgacgacggaccaaatttgaacgggttggaattctatcttgaagaagtcgccaagcaaacaaagacacttttgtaggaactaattt 125  Q
    ||||||| | |||||| ||||| || |||||||| ||  |||||||||||||||||||||| ||||||||||||| ||| ||||| | |||||||| |||    
T  30516328 taggttgaagaacatgtcgacgaactaaatttgatcgatttggaattctatcttgaagaagacgccaagcaaacatagatactttcgaaggaactagttt 30516427  T
Q  126 gtgtcacacatcattaagaacaccaaccgccacttgttcatttgaagtggttaggtaatgatacgtcccactaaccgtatagccatgaatcggatcaagc 225  Q
    ||| || || |||||||| |||||| |||||||||| |||| |  |||||||||| || |||| |||||||| |||||||||||||||||| ||||||||    
T  30516428 gtgccatacgtcattaagtacaccagccgccacttgatcatctatagtggttaggaaacgataagtcccactgaccgtatagccatgaatcagatcaagc 30516527  T
Q  226 aaccaccgccactagtcctatatattttcctgcaaaccaacgttatttaacagtgaaacacactccctcacactctcttcctcccaagccagcaatcgac 325  Q
    ||||||| ||||| |||||  || | |||||||||| |||| ||||||||||  ||| |||||||||||||||| || ||||||||  ||| ||| ||||    
T  30516528 aaccaccaccactggtcctgaatgtattcctgcaaaacaacattatttaacaaagaagcacactccctcacactatcctcctcccacaccatcaaacgac 30516627  T
Q  326 acctccaaaccca 338  Q
     |||||| |||||    
T  30516628 gcctccacaccca 30516640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 18 - 383
Target Start/End: Complemental strand, 15140225 - 15139860
Alignment:
Q  18 attgtcaataggttggataacatgacgacggaccaaatttgaacgggttggaattctatcttgaagaagtcgccaagcaaacaaagacacttttgtagga 117  Q
    |||||| |||||||||| |||||| ||||| |||||||| || |  |||||||||||||||||||| || ||||||||||||| ||| ||||||||||||    
T  15140225 attgtcgataggttggagaacatgtcgacgcaccaaattagatctagttggaattctatcttgaaggagacgccaagcaaacagagaaacttttgtagga 15140126  T
Q  118 actaatttgtgtcacacatcattaagaacaccaaccgccacttgttcatttgaagtggttaggtaatgatacgtcccactaaccgtatagccatgaatcg 217  Q
    || |||||||| ||||||||||| |  | |||| | ||||| ||||| | |  | |||||||| ||  ||| ||||||||||||| |||||||||||| |    
T  15140125 accaatttgtgccacacatcatttaacaaaccatcagccacctgttcctctatattggttaggaaacaataagtcccactaaccgaatagccatgaatgg 15140026  T
Q  218 gatcaagcaaccaccgccactagtcctatatattttcctgcaaaccaacgttatttaacagtgaaacacactccctcacactctcttcctcccaagccag 317  Q
    |||||||||| |  ||||| | |||||  || |||||||||||| ||| ||||| ||| |   || ||||||| |||||||| || |||||||| ||||     
T  15140025 gatcaagcaatcctcgccaatggtcctgaatgttttcctgcaaaacaatgttatgtaataaaaaagcacactctctcacactatcctcctcccacgccat 15139926  T
Q  318 caatcgacacctccaaacccatccatattcgcctacctcccaccccattctcgccatctcctccac 383  Q
    ||| |||  |||||||||||| ||||  |||||| ||||||||||   ||||||||||||||||||    
T  15139925 caaccgatgcctccaaacccacccattgtcgccttcctcccaccctgctctcgccatctcctccac 15139860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 190 - 379
Target Start/End: Original strand, 45701898 - 45702087
Alignment:
Q  190 gtcccactaaccgtatagccatgaatcggatcaagcaaccaccgccactagtcctatatattttcctgcaaaccaacgttatttaacagtgaaacacact 289  Q
    |||||||||||||  ||||||||||| |||||||||| ||| ||| | | ||||  || |||||||||||||  ||||||||| || |      | ||||    
T  45701898 gtcccactaaccgagtagccatgaataggatcaagcacccaacgctagtggtccggtaaattttcctgcaaaataacgttattcaataaattcgcgcact 45701997  T
Q  290 ccctcacactctcttcctcccaagccagcaatcgacacctccaaacccatccatattcgcctacctcccaccccattctcgccatctcct 379  Q
    |||||||||| || |||| |||||||| ||| ||||  |||||   ||| |||| | ||||| |||||||||||||||||||||| ||||    
T  45701998 ccctcacactatcctcctaccaagccaacaaccgacgtctccatctccacccatctccgccttcctcccaccccattctcgccatatcct 45702087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 190 - 325
Target Start/End: Original strand, 45468864 - 45468999
Alignment:
Q  190 gtcccactaaccgtatagccatgaatcggatcaagcaaccaccgccactagtcctatatattttcctgcaaaccaacgttatttaacagtgaaacacact 289  Q
    |||||||||||||  ||||||||||| |||||||||| ||| ||||| | ||||  || |||||||||||||  ||||||||| || |     || ||||    
T  45468864 gtcccactaaccgagtagccatgaataggatcaagcacccaacgccagtggtccggtaaattttcctgcaaaataacgttattcaataaattcacgcact 45468963  T
Q  290 ccctcacactctcttcctcccaagccagcaatcgac 325  Q
    |||||||||| || ||||||||||||| ||| ||||    
T  45468964 ccctcacactatcctcctcccaagccaacaaccgac 45468999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 338
Target Start/End: Complemental strand, 44602716 - 44602663
Alignment:
Q  285 acactccctcacactctcttcctcccaagccagcaatcgacacctccaaaccca 338  Q
    ||||||||| ||||||||||||||||| || | ||| ||||||||||| |||||    
T  44602716 acactccctaacactctcttcctcccacgctaacaaacgacacctccacaccca 44602663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 119; Significance: 1e-60; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 11 - 397
Target Start/End: Complemental strand, 5195098 - 5194712
Alignment:
Q  11 cacagacattgtcaataggttggataacatgacgacggaccaaatttgaacgggttggaattctatcttgaagaagtcgccaagcaaacaaagacacttt 110  Q
    |||| ||||| || |||||||| | |||||| ||||| || |||||||| || ||||||||||||||||||||||| |||||||| |||| ||| |||||    
T  5195098 cacaaacattatcgataggttgaagaacatgtcgacgaactaaatttgatcgagttggaattctatcttgaagaagacgccaagcgaacagagagacttt 5194999  T
Q  111 tgtaggaactaatttgtgtcacacatcattaagaacaccaaccgccacttgttcatttgaagtggttaggtaatgatacgtcccactaaccgtatagcca 210  Q
    || || ||||| |||||| ||||| ||| |||| |||||| || |||| || || | |  |||||||||| || |||| |||||| | ||||||||||||    
T  5194998 tgaagcaactagtttgtgccacacgtcactaagtacaccagccaccacatgatcctctatagtggttaggaaacgataagtcccattgaccgtatagcca 5194899  T
Q  211 tgaatcggatcaagcaaccaccgccactagtcctatatattttcctgcaaaccaacgttatttaacagtgaaacacactccctcacactctcttcctccc 310  Q
    ||||| |||||||| ||||||||||||| |||||   | |||||||||||| |||||||||||||||| ||| |||| ||||||||||| ||||||||||    
T  5194898 tgaattggatcaagtaaccaccgccactggtcctgattgttttcctgcaaaacaacgttatttaacagagaagcacaatccctcacactatcttcctccc 5194799  T
Q  311 aagccagcaatcgacacctccaaacccatccatattcgcctacctcccaccccattctcgccatctcctccactaaacaatccttat 397  Q
    | || | ||| |||| ||| || ||||| ||| |  |||||  |||||||||||     |||||||||||||| |||  ||||||||    
T  5194798 acgctatcaaacgacgccttcacacccacccagaaccgcctgtctcccaccccaaatgtgccatctcctccaccaaaacatccttat 5194712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 11 - 299
Target Start/End: Original strand, 31848584 - 31848872
Alignment:
Q  11 cacagacattgtcaataggttggataacatgacgacggaccaaatttgaacgggttggaattctatcttgaagaagtcgccaagcaaacaaagacacttt 110  Q
    |||| |||||||  |||||||||| |||||| | ||| ||||||||||| || |||||  ||||||||||||  || |||||||||||||||||||| ||    
T  31848584 cacaaacattgttgataggttggagaacatgtctacgaaccaaatttgatcgagttggtgttctatcttgaaagagacgccaagcaaacaaagacacctt 31848683  T
Q  111 tgtaggaactaatttgtgtcacacatcattaagaacaccaaccgccacttgttcatttgaagtggttaggtaatgatacgtcccactaaccgtatagcca 210  Q
    |||||||||||||||||| ||||||||||||   |  ||| | ||||| |  |||| |||| | |||||| || ||||  ||||||| |||||||||||     
T  31848684 tgtaggaactaatttgtgccacacatcattacataatccagcagccacctaatcatctgaattagttaggaaacgataaatcccactgaccgtatagccg 31848783  T
Q  211 tgaatcggatcaagcaaccaccgccactagtcctatatattttcctgcaaaccaacgttatttaacagtgaaacacactccctcacact 299  Q
    |||||||||| ||||| ||||||||||   ||||  || |||||||||||| |||||||||||||||| ||| ||||||||||||||||    
T  31848784 tgaatcggattaagcatccaccgccaccgatcctgaatgttttcctgcaaaacaacgttatttaacagagaagcacactccctcacact 31848872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 26 - 397
Target Start/End: Original strand, 4103626 - 4103997
Alignment:
Q  26 taggttggataacatgacgacggaccaaatttgaacgggttggaattctatcttgaagaagtcgccaagcaaacaaagacacttttgtaggaactaattt 125  Q
    ||||||| |||||||| | ||||||||||||||| | ||| |||||||||||||  |  || ||||||||||| | ||| |||||||||||||| |||||    
T  4103626 taggttgaataacatgtctacggaccaaatttgatctggtcggaattctatctttcaagagacgccaagcaaaaagagatacttttgtaggaaccaattt 4103725  T
Q  126 gtgtcacacatcattaagaacaccaaccgccacttgttcatttgaagtggttaggtaatgatacgtcccactaaccgtatagccatgaatcggatcaagc 225  Q
     || |||||||| ||   |||| ||||   ||| || ||||    ||  |||||  |  |||||||||||| |||||  || ||||| |||||||||||     
T  4103726 atgccacacatcgttgttaacaacaacgatcacctgatcatccatagatgttagaaagcgatacgtcccacgaaccgagtatccatgtatcggatcaagt 4103825  T
Q  226 aaccaccgccactagtcctatatattttcctgcaaaccaacgttatttaacagtgaaacacactccctcacactctcttcctcccaagccagcaatcgac 325  Q
    ||||| ||||| | ||||| || |||||||||||||  ||||||||| || |     |||||||||||||| |  || |||||||| |||  ||| ||||    
T  4103826 aaccaacgccagtggtcctgtaaattttcctgcaaagtaacgttattcaataaattcacacactccctcactccatcctcctcccacgcccacaaccgac 4103925  T
Q  326 acctccaaacccatccatattcgcctacctcccaccccattctcgccatctcctccactaaacaatccttat 397  Q
     ||||||   ||| |||    | ||| | |||||||||||||||||||| |||||||| ||||  |||||||    
T  4103926 gcctccacctccacccactacctccttcttcccaccccattctcgccatatcctccaccaaactctccttat 4103997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 131
Target Start/End: Original strand, 12607785 - 12607905
Alignment:
Q  11 cacagacattgtcaataggttggataacatgacgacggaccaaatttgaacgggttggaattctatcttgaagaagtcgccaagcaaacaaagacacttt 110  Q
    |||| |||||||||| || ||| |  ||||| | ||| |||||||||||||| ||||| |||||||| ||||| || |||||||||||||  ||||||||    
T  12607785 cacaaacattgtcaacagattgaaggacatgtctacgcaccaaatttgaacgagttggtattctatcctgaagtaggcgccaagcaaacagtgacacttt 12607884  T
Q  111 tgtaggaactaatttgtgtca 131  Q
     ||||| |||| ||| |||||    
T  12607885 ggtaggtactagtttatgtca 12607905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 397
Target Start/End: Original strand, 5676204 - 5676416
Alignment:
Q  185 gatacgtcccactaaccgtatagccatgaatcggatcaagcaaccaccgccactagtcctatatattttcctgcaaaccaacgttatttaacagtgaaac 284  Q
    |||| |||||||||||||  ||||||||||| |||||||||||||| ||| | | || || || ||||||||||| |  ||||||| | || |     ||    
T  5676204 gataagtcccactaaccgagtagccatgaataggatcaagcaaccaacgctagtggttctgtaaattttcctgcagaataacgttagtcaataaattcac 5676303  T
Q  285 acactccctcacactctcttcctcccaagccagcaatcgacacctccaaacccatccatattcgcctacctcccaccccattctcgccatctcctccact 384  Q
    ||||||||||||||| || ||||||||||||| ||| |||   | |||   ||| |||  | ||||| |||||||||||| || |||||| ||||||||     
T  5676304 acactccctcacactatcctcctcccaagccaacaaccgatgtcgccatctccacccacctccgccttcctcccaccccaatcccgccatatcctccacg 5676403  T
Q  385 aaacaatccttat 397  Q
     |||| |||||||    
T  5676404 gaacattccttat 5676416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 298
Target Start/End: Original strand, 12607978 - 12608069
Alignment:
Q  204 atagccatgaatcggatcaagcaaccaccgccactagtcctatatattttcctgcaaaccaacgttatttaacagtgaaacacactccctcacac 298  Q
    ||||||||| ||||||  |||||||||||   | | |||||| ||||| ||||||||| |||| |||| |||||| |||||||||||||||||||    
T  12607978 atagccatggatcggaaaaagcaaccacc---attggtcctaaatattatcctgcaaaacaacattatgtaacagagaaacacactccctcacac 12608069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 314
Target Start/End: Complemental strand, 18489082 - 18488965
Alignment:
Q  197 taaccgtatagccatgaatcggatcaagcaaccaccgccactagtcctatatattttcctgcaaaccaacgttatttaacagtgaaacacactccctcac 296  Q
    |||||||||| |||||||| ||||| || ||||||| ||||| |||||  ||||| ||||||||| ||| ||||| |||||     ||||| ||||||||    
T  18489082 taaccgtataaccatgaataggatcgagtaaccacctccactggtcctgaatattatcctgcaaaacaatgttatgtaacaaattgacacagtccctcac 18488983  T
Q  297 actctcttcctcccaagc 314  Q
    ||  || |||||||||||    
T  18488982 accatcctcctcccaagc 18488965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 16478163 - 16478229
Alignment:
Q  41 gacgacggaccaaatttgaacgggttggaattctatcttgaagaagtcgccaagcaaacaaagacac 107  Q
    ||||||| ||||||||||  || || | || ||||||||||||||| ||||||||||||| ||||||    
T  16478163 gacgacgcaccaaatttgcgcgagtagcaactctatcttgaagaagacgccaagcaaacacagacac 16478229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 314
Target Start/End: Original strand, 8234572 - 8234604
Alignment:
Q  282 aacacactccctcacactctcttcctcccaagc 314  Q
    ||||||||||||||||||||| |||||||||||    
T  8234572 aacacactccctcacactctcctcctcccaagc 8234604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 26 - 398
Target Start/End: Original strand, 19668030 - 19668402
Alignment:
Q  26 taggttggataacatgacgacggaccaaatttgaacgggttggaattctatcttgaagaagtcgccaagcaaacaaagacacttttgtaggaactaattt 125  Q
    ||||||||| |||||||||||| |||||||||   |  || |||||||| ||||||| ||| |||||||||||||  || |||||   ||| || | |||    
T  19668030 taggttggagaacatgacgacgcaccaaatttactctagtcggaattctttcttgaaaaagacgccaagcaaacagtgatactttaaaaggtacaagttt 19668129  T
Q  126 gtgtcacacatcattaagaacaccaaccgccacttgttcatttgaagtggttaggtaatgatacgtcccactaaccgtatagccatgaatcggatcaagc 225  Q
    ||| | |||||||||||| |  ||||  ||| | || |||| |  ||||||||| ||| |||| |||||||||||||  |||||||||| | |||| |||    
T  19668130 gtgcctcacatcattaagtaacccaatagccgcatgatcatctatagtggttagataacgataagtcccactaaccgagtagccatgaaacagatccagc 19668229  T
Q  226 aaccaccgccactagtcctatatattttcctgcaaaccaacgttatttaacagtgaaacacactccctcacactctcttcctcccaagccagcaatcgac 325  Q
    |||||  |||| | ||| |  ||||||||||||||| |||| ||||||||||| ||| ||||||| ||||| ||||| |||||||| ||||  |  ||||    
T  19668230 aaccagtgccattggtcttgaatattttcctgcaaaacaacattatttaacagagaagcacactctctcacgctctcctcctcccacgccaagagacgac 19668329  T
Q  326 acctccaaacccatccatattcgcctacctcccaccccattctcgccatctcctccactaaacaatccttatt 398  Q
     |||||| ||||| ||||   | ||| |||| ||||||| ||||||||||||||||||  |||||||||||||    
T  19668330 gcctccacacccacccattaccaccttcctctcaccccactctcgccatctcctccaccgaacaatccttatt 19668402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 7937005 - 7936897
Alignment:
Q  11 cacagacattgtcaataggttggataacatgacgacggaccaaatttgaacgggttggaattctatcttgaagaagtcgccaagcaaacaaagacacttt 110  Q
    |||| ||||||||||||| ||| |  |||||  |||| |||||||| || || ||||| |||||||| ||||| || ||| |||||||||| ||||||||    
T  7937005 cacatacattgtcaatagattgtaggacatgttgacgcaccaaattcgatcgagttggtattctatcctgaagtaggcgc-aagcaaacaacgacacttt 7936907  T
Q  111 tgtaggaact 120  Q
     |||||||||    
T  7936906 ggtaggaact 7936897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 127
Target Start/End: Complemental strand, 10751732 - 10751669
Alignment:
Q  64 gttggaattctatcttgaagaagtcgccaagcaaacaaagacacttttgtaggaactaatttgt 127  Q
    ||||||| |||||||| ||| |||||||||||||| | | | |||||||| |||||||||||||    
T  10751732 gttggaactctatcttaaaggagtcgccaagcaaaaagaaagacttttgttggaactaatttgt 10751669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 314
Target Start/End: Original strand, 18378276 - 18378341
Alignment:
Q  249 attttcctgcaaaccaacgttatttaacagtgaaacacactccctcacactctcttcctcccaagc 314  Q
    ||||||||||||| ||| ||||| |||||    ||||||||||||||||| ||| |||||||||||    
T  18378276 attttcctgcaaagcaatgttatgtaacaagacaacacactccctcacaccctcctcctcccaagc 18378341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 138
Target Start/End: Complemental strand, 30044758 - 30044661
Alignment:
Q  41 gacgacggaccaaatttgaacgggttggaattctatcttgaagaagtcgccaagcaaacaaagacacttttgtaggaactaatttgtgtcacacatca 138  Q
    ||||||| ||||||||||  || || | || ||||||||||||||| | ||||||||||| |||||| || | ||||||  |||| || |||||||||    
T  30044758 gacgacgcaccaaatttgcgcgagtagcaactctatcttgaagaagacaccaagcaaacacagacaccttggaaggaacacatttatgccacacatca 30044661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 147
Target Start/End: Complemental strand, 12215002 - 12214922
Alignment:
Q  67 ggaattctatcttgaagaagtcgccaagcaaacaaagacacttttgtaggaactaatttgtgtcacacatcattaagaaca 147  Q
    |||||||| |||||||| |   |||||||||| |  ||||||||||| ||||| |||||||| ||||||||| ||| ||||    
T  12215002 ggaattctgtcttgaagcaactgccaagcaaaaagcgacacttttgtcggaaccaatttgtgccacacatcagtaaaaaca 12214922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 29934214 - 29934104
Alignment:
Q  28 ggttggataacatgacgacggaccaaatttgaacgggttggaattctatcttgaagaagtcgccaagcaaacaaagacacttttgtaggaactaatttgt 127  Q
    ||||| |||||||||||||| ||||||||||| |  || ||||||||||||| |||||| |||||||  |||||||| ||||| | | |||| |||||||    
T  29934214 ggttgaataacatgacgacgcaccaaatttgatctcgtcggaattctatcttaaagaagacgccaagttaacaaagaaactttagaatgaaccaatttgt 29934115  T
Q  128 gtcacacatca 138  Q
      |||||||||    
T  29934114 accacacatca 29934104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 39919874 - 39919935
Alignment:
Q  43 cgacggaccaaatttgaacgggttggaattctatcttgaagaagtcgccaagcaaacaaaga 104  Q
    ||||| |||||||||| ||| || | || ||||||||||||||| |||||||||||||||||    
T  39919874 cgacgcaccaaatttgtacgagtagcaactctatcttgaagaagacgccaagcaaacaaaga 39919935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 338
Target Start/End: Original strand, 39920028 - 39920169
Alignment:
Q  197 taaccgtatagccatgaatcggatcaagcaaccaccgccactagtcctatatattttcctgcaaaccaacgttatttaacagtgaaacacactccctcac 296  Q
    |||| ||||||||| |||| || || || |||||||||||||  ||||  ||||| ||||||||| ||| |||||||||||     ||||||||||||||    
T  39920028 taactgtatagccaagaatagggtcgagtaaccaccgccacttatcctgaatattatcctgcaaaacaatgttatttaacaaattgacacactccctcac 39920127  T
Q  297 actctcttcctcccaagccagcaatcgacacctccaaaccca 338  Q
    ||  || |||||||| ||||  || |||| |||||| |||||    
T  39920128 accttcctcctcccaggccaataaacgacgcctccacaccca 39920169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 138
Target Start/End: Original strand, 8305226 - 8305276
Alignment:
Q  88 cgccaagcaaacaaagacacttttgtaggaactaatttgtgtcacacatca 138  Q
    ||||||||||| || ||||||||| | |||||||||||||| |||||||||    
T  8305226 cgccaagcaaaaaacgacacttttttcggaactaatttgtgccacacatca 8305276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 138
Target Start/End: Complemental strand, 9017577 - 9017475
Alignment:
Q  36 aacatgacgacggaccaaatttgaacgggttggaattctatcttgaagaagtcgccaagcaaacaaagacacttttgtaggaactaatttgtgtcacaca 135  Q
    |||||||||||| ||||  ||||| |  || |||||||| |||||||| || |||||| |||| |  || |||||||| ||||| |||||||| ||||||    
T  9017577 aacatgacgacgcaccaggtttgatctcgtaggaattctgtcttgaaggagacgccaaacaaaaagtgaaacttttgtcggaaccaatttgtgccacaca 9017478  T
Q  136 tca 138  Q
    |||    
T  9017477 tca 9017475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 147
Target Start/End: Complemental strand, 21313281 - 21313201
Alignment:
Q  67 ggaattctatcttgaagaagtcgccaagcaaacaaagacacttttgtaggaactaatttgtgtcacacatcattaagaaca 147  Q
    ||||||||||||||||| |  ||||||||||| |  ||||||||||| || || |||||||| ||||| ||| ||| ||||    
T  21313281 ggaattctatcttgaagcaaccgccaagcaaaaagcgacacttttgtcgggaccaatttgtgccacacgtcaataaaaaca 21313201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 272
Target Start/End: Original strand, 32316 - 32398
Alignment:
Q  190 gtcccactaaccgtatagccatgaatcggatcaagcaaccaccgccactagtcctatatattttcctgcaaaccaacgttatt 272  Q
    |||||| |||||| ||| ||||||||  ||||||||||||| ||||| | ||||| || |||||||| ||||  |||||||||    
T  32316 gtcccattaaccgaatatccatgaatatgatcaagcaaccaacgccagttgtcctgtaaattttcctacaaaataacgttatt 32398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 314
Target Start/End: Original strand, 14794715 - 14794744
Alignment:
Q  285 acactccctcacactctcttcctcccaagc 314  Q
    ||||||||||||||||||||||||||||||    
T  14794715 acactccctcacactctcttcctcccaagc 14794744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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