View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4270_low_16 (Length: 355)
Name: NF4270_low_16
Description: NF4270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4270_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 15 - 350
Target Start/End: Complemental strand, 40668016 - 40667671
Alignment:
| Q |
15 |
aaatagacattcctttagaagataacacccaaatccttctatacttatctaccggaatcaactaaaagaaaacgctttcgaagatatctgcaaggtgtat |
114 |
Q |
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| T |
40668016 |
aaatagacattcctttagaagataacacccaaatccttctatacttatctaccggaatcaactaaaagaaaacgctttggaagatatctgcaaggtgtat |
40667917 |
T |
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| Q |
115 |
agattaggggtaaaaacgaaaatttaggagacttaaaaacattaagaggcctaaaatgaaagcttcttagaataaagacattttcaatcaatgaaatgag |
214 |
Q |
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| T |
40667916 |
agattaggggtaaaaacgaaaatataggagacttaaaaacattaagaggcctaaaaagaaagcttcttagaataaagacattttcaatcaatgaaatgag |
40667817 |
T |
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| Q |
215 |
caacaagttatagctgttagcgtaacaaactctatccctcttg--------------atttttatgcatattcatatatttcacaacttgatcatgtgac |
300 |
Q |
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| T |
40667816 |
caacaagttatagctgttagcgtaacaaactctatccctcttgattgctaagatattatttttatgcatattcatatatttcacaacttgatcatgtgac |
40667717 |
T |
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| Q |
301 |
ctgtctgtctctttgtggaatatgctatttaaggatccctcgtctctgct |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40667716 |
----ctgtctctttgtggaatatgctatttaaggatccctcgtctctgct |
40667671 |
T |
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