View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4270_low_18 (Length: 344)
Name: NF4270_low_18
Description: NF4270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4270_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 53 - 328
Target Start/End: Complemental strand, 50969426 - 50969151
Alignment:
| Q |
53 |
ggaaaatgcaaagtaaaagctgaagtggacacaccataaacagtacagtgagagcttaataatatttatcnnnnnnntctcgagatttatctgagaacaa |
152 |
Q |
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| T |
50969426 |
ggaaaatgcaaagtaaaagctgaagtggacacaccataaacagtacagtgagagcttaataatatttatcaaaaaaatctcgagatttatctgagaacaa |
50969327 |
T |
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| Q |
153 |
atttccgatcaacacggaaacgttcatcgaattatgtataagaagagaaaacgcttgatctaaaaggagaaggtgcacgcgaactcacctgtggatcacc |
252 |
Q |
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| T |
50969326 |
atttccgatcaacacggaaacgttcatcgaattatgtataagaagagaaaacgcttgatctaaaaggagaaggtgcacgcgaactcacctgtggatcacc |
50969227 |
T |
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| Q |
253 |
gcacacgatctctcccagaagcttaaccgattctcaacggctttggacagaaacaacgccttttgatagagctttc |
328 |
Q |
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| T |
50969226 |
gcacacgatctctcccagaagcttaaccgattctcaacggctttggacagaaacaacgccttttgatagagctttc |
50969151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 53 - 328
Target Start/End: Complemental strand, 51072562 - 51072287
Alignment:
| Q |
53 |
ggaaaatgcaaagtaaaagctgaagtggacacaccataaacagtacagtgagagcttaataatatttatcnnnnnnntctcgagatttatctgagaacaa |
152 |
Q |
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| T |
51072562 |
ggaaaatgcaaagtaaaagctgaagtggacacaccataaacagtacagtgagagcttaataatatttatcaaaaaaatctcgagatttatctgagaacaa |
51072463 |
T |
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| Q |
153 |
atttccgatcaacacggaaacgttcatcgaattatgtataagaagagaaaacgcttgatctaaaaggagaaggtgcacgcgaactcacctgtggatcacc |
252 |
Q |
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| T |
51072462 |
atttccgatcaacacggaaacgttcatcgaattatgtataagaagagaaaacgcttgatctaaaaggagaaggtgcacgcgaactcacctgtggatcacc |
51072363 |
T |
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| Q |
253 |
gcacacgatctctcccagaagcttaaccgattctcaacggctttggacagaaacaacgccttttgatagagctttc |
328 |
Q |
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| T |
51072362 |
gcacacgatctctcccagaagcttaaccgattctcaacggctttggacagaaacaacgccttttgatagagctttc |
51072287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 50969479 - 50969443
Alignment:
| Q |
1 |
taaaaaaagagcgtgaaacgttagcaataaagcaagt |
37 |
Q |
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| T |
50969479 |
taaaaaaagagcgtgaaacggtagcaataaagcaagt |
50969443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 51072615 - 51072579
Alignment:
| Q |
1 |
taaaaaaagagcgtgaaacgttagcaataaagcaagt |
37 |
Q |
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| T |
51072615 |
taaaaaaagagcgtgaaacggtagcaataaagcaagt |
51072579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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