View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4270_low_19 (Length: 336)
Name: NF4270_low_19
Description: NF4270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4270_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 36403989 - 36404310
Alignment:
| Q |
1 |
gttccttcaatcctggaagacagatgatgaccctggaaaaggtgcgttcacggtggaattcagcaccattggtaaacctcagttgtttatgtacaaccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36403989 |
gttccttcaatcctggaagacagatgatgaccctggaaaaggtgcgttcacggtggaattcagcaccattggtaaacctcagttgtttatgtacaaccat |
36404088 |
T |
|
| Q |
101 |
aaccttccatggtggcgtgctggacattggaatggagaactgtttgcaggtgtacctaatatgaaacgagatatggaaacttttaacgtttcctttgtgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36404089 |
aaccttccatggtggcgtgctggacattggaatggagaactgtttgcaggtgtacctaatatgaaacgagatatggaaacttttaacgtttcttttgtgg |
36404188 |
T |
|
| Q |
201 |
aagatgaaaactccgtagcaatctcatataacatgtttgataagtctgtcatcgctaggaaagttgttaatcaatctggtttctttcaaatattcacgtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36404189 |
aagatgaaaactccgtagcaatctcatataacatgtttgataagtctgtcatcgctaggaaagttgttaatcaatctggtttctttcaaatattcacgtg |
36404288 |
T |
|
| Q |
301 |
ggggaatgaaaagaatcaatgg |
322 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
36404289 |
ggggaatgaaaagaatcaatgg |
36404310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 4 - 322
Target Start/End: Original strand, 36397059 - 36397377
Alignment:
| Q |
4 |
ccttcaatcctggaagacagatgatgaccctggaaaaggtgcgttcacggtggaattcagcaccattggtaaacctcagttgtttatgtacaaccataac |
103 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||| ||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
36397059 |
ccttcaatcctggaagacagaagatgaccctggaaaaggtgcattcacggtgaaattcagcagcataggtatacctcagttgtttatgtacaaccataac |
36397158 |
T |
|
| Q |
104 |
cttccatggtggcgtgctggacattggaatggagaactgtttgcaggtgtacctaatatgaaacgagatatggaaacttttaacgtttcctttgtggaag |
203 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||| ||| |||| |||| |||||||||||||||||||| || |||||||||| | ||| |||||||||| |
|
|
| T |
36397159 |
cttccatggtggcgtggtggacattggaacggagcactatttgtaggtatacctaatatgaaacgagatttgcaaacttttaatgcttcttttgtggaag |
36397258 |
T |
|
| Q |
204 |
atgaaaactccgtagcaatctcatataacatgtttgataagtctgtcatcgctaggaaagttgttaatcaatctggtttctttcaaatattcacgtgggg |
303 |
Q |
| |
|
| || |||| |||||| | ||||| |||||||||||||||||||||| |||||| ||||||| | |||||||||||| ||||||||||||| ||| |
|
|
| T |
36397259 |
aagataactatgtagcactttcatacgacatgtttgataagtctgtcatagctaggttagttgttcagcaatctggtttcattcaaatattcacttggaa |
36397358 |
T |
|
| Q |
304 |
gaatgaaaagaatcaatgg |
322 |
Q |
| |
|
||| |||||| ||||||| |
|
|
| T |
36397359 |
caatcaaaagagtcaatgg |
36397377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 36373314 - 36373613
Alignment:
| Q |
1 |
gttccttcaatcctggaagacagatgatgaccctggaaaaggtgcgttcacggtggaattcagcaccattggtaaacctcagttgtttatgtacaaccat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| |||||| || ||||| ||||||||||||||||||||||||||| |
|
|
| T |
36373314 |
gttccttcaatcctggaagacagatgatgaccctggaaatggtgcattcacagtgaaattcaacagcattgtcaaacctcagttgtttatgtacaaccat |
36373413 |
T |
|
| Q |
101 |
aaccttccatggtggcgtgctggacattggaatggagaactgtttgcaggtgtacctaatatgaaacgagatatggaaacttttaacgtttcctttgtgg |
200 |
Q |
| |
|
| ||||||||||||||| |||||||||||| |||| | | || | ||||| ||||||||||||||||||||||| | ||| || ||||| ||||||| |
|
|
| T |
36373414 |
gattttccatggtggcgtggtggacattggaacggagcaatcttagtaggtgcacctaatatgaaacgagatatggcgattttgaatgtttcttttgtgg |
36373513 |
T |
|
| Q |
201 |
aagatgaa---aactccgtagcaatctcatataacatgtttgataagtctgtcatcgctaggaaagttgttaatcaatctggtttctttcaaatattcac |
297 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||| | |||||||||||||||||||||||||| |
|
|
| T |
36373514 |
aagatgatgataactatgtagcaatctcatataacatgtttgataagtctgtcatagctaggatagttgttcagcaatctggtttctttcaaatattcac |
36373613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 3 - 302
Target Start/End: Original strand, 36411305 - 36411604
Alignment:
| Q |
3 |
tccttcaatcctggaagacagatgatgaccctggaaaaggtgcgttcacggtggaattcagcaccattggtaaacctcagttgtttatgtacaaccataa |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| || |||||||||||||||||| | |
|
|
| T |
36411305 |
tccttcaatcctggaagacagatgatgaccctggaaaaggtgcgttcacggtgaaattcagcaccattggcaaaccacaattgtttatgtacaaccatga |
36411404 |
T |
|
| Q |
103 |
ccttccatggtggcgtgctggacattggaatggagaactgtttgcaggtgtacctaatatgaaacgagatatggaaacttttaacgtttcctttgtggaa |
202 |
Q |
| |
|
| ||| |||||||||| ||||||||||||||||| | | || | ||| ||||| |||||| | ||||||||| | | ||| ||||| | || ||| |
|
|
| T |
36411405 |
tcgtccttggtggcgtggtggacattggaatggagcaatattagtaggcctacctcatatgataggagatatggcagttcgtaatgtttcttgggttgaa |
36411504 |
T |
|
| Q |
203 |
gatgaaaactccgtagcaatctcatataacatgtttgataagtctgtcatcgctaggaaagttgttaatcaatctggtttctttcaaatattcacgtggg |
302 |
Q |
| |
|
||||| |||| ||| || ||||||||||||||||| ||||||||||||| | |||| ||| ||| | ||||||||||||||||||| ||||| ||||| |
|
|
| T |
36411505 |
gatgacaactatgtatcactctcatataacatgtttaataagtctgtcattacaaggatagtggttcagcaatctggtttctttcaaacattcatgtggg |
36411604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 3 - 302
Target Start/End: Original strand, 36416636 - 36416935
Alignment:
| Q |
3 |
tccttcaatcctggaagacagatgatgaccctggaaaaggtgcgttcacggtggaattcagcaccattggtaaacctcagttgtttatgtacaaccataa |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| || |||||||||||||||||| | |
|
|
| T |
36416636 |
tccttcaatcctggaagacagatgatgaccctggaaaaggtgcgttcacggtgaaattcagcaccattggcaaaccacaattgtttatgtacaaccatga |
36416735 |
T |
|
| Q |
103 |
ccttccatggtggcgtgctggacattggaatggagaactgtttgcaggtgtacctaatatgaaacgagatatggaaacttttaacgtttcctttgtggaa |
202 |
Q |
| |
|
| ||| |||||||||| ||||||||||||||||| | | || | ||| ||||| |||||| | ||||||||| | | ||| ||||| | || ||| |
|
|
| T |
36416736 |
tcgtccttggtggcgtggtggacattggaatggagcaatattagtaggcctacctcatatgataggagatatggcagttcgtaatgtttcttgggttgaa |
36416835 |
T |
|
| Q |
203 |
gatgaaaactccgtagcaatctcatataacatgtttgataagtctgtcatcgctaggaaagttgttaatcaatctggtttctttcaaatattcacgtggg |
302 |
Q |
| |
|
||||| |||| ||| || ||||||||||||||||| ||||||||||||| | |||| ||| ||| | ||||||||||||||||||| ||||| ||||| |
|
|
| T |
36416836 |
gatgacaactatgtatcactctcatataacatgtttaataagtctgtcattacaaggatagtggttcagcaatctggtttctttcaaacattcatgtggg |
36416935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 8 - 302
Target Start/End: Original strand, 36368705 - 36368999
Alignment:
| Q |
8 |
caatcctggaagacagatgatgaccctggaaaaggtgcgttcacggtggaattcagcaccattggtaaacctcagttgtttatgtacaaccataaccttc |
107 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| || ||||| || ||||||||| |||||| ||||||||||||||||||||||||||| | |||| |
|
|
| T |
36368705 |
caatcatggaagacagatgatgaccctggaaaaggcgcattcacattgaaattcagcagcattggaaaacctcagttgtttatgtacaaccatgatcttc |
36368804 |
T |
|
| Q |
108 |
catggtggcgtgctggacattggaatggagaactgtttgcaggtgtacctaatatgaaacgagatatggaaacttttaacgtttcctttgtggaagatga |
207 |
Q |
| |
|
| |||||||||| |||||| ||||| |||||| | |||| |||| ||||||||||||||||||||||| |||||||| ||||| || || |||||||| |
|
|
| T |
36368805 |
cttggtggcgtggtggacactggaacggagaattatttgtaggtatacctaatatgaaacgagatatgaccacttttaatgtttctttggttgaagatga |
36368904 |
T |
|
| Q |
208 |
aaactccgtagcaatctcatataacatgtttgataagtctgtcatcgctaggaaagttgttaatcaatctggtttctttcaaatattcacgtggg |
302 |
Q |
| |
|
|||| |||||| | | ||||||||||| |||||||||||||| |||| | || ||| | ||||||||||||||||||| ||||| ||||| |
|
|
| T |
36368905 |
caactatgtagcacttacgtataacatgttcgataagtctgtcattactagaatagcggttcagcaatctggtttctttcaaacattcatgtggg |
36368999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 36433326 - 36433619
Alignment:
| Q |
1 |
gttccttcaatcctggaagacagatgatgaccctggaaaaggtgcgttcacggtggaattcagcaccattggtaaacctcagttgtttatgtacaaccat |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| |||||| || ||||||||||| |||||||| ||||| | ||||||||||| ||| |
|
|
| T |
36433326 |
gttccttcaatcctggaagacagaggatgaccctggaaaaggtgccttcacgttgaaattcagcaccgttggtaaaactcagctttttatgtacaaacat |
36433425 |
T |
|
| Q |
101 |
aaccttccatggtggcgtgctggacattggaatggagaactgtttgcaggtgtacctaatatgaaacgagatatggaaacttttaacgtttcctttgtgg |
200 |
Q |
| |
|
|||||||| |||||||||| || || ||||||||||| ||| || ||||||| |||||| ||||||| ||| ||| ||||||||| |||| ||||| |
|
|
| T |
36433426 |
aaccttccctggtggcgtggtgaaccttggaatggagcactattatcaggtgtgcctaatgcgaaacgaaatagggacacttttaacatttcttttgttc |
36433525 |
T |
|
| Q |
201 |
aagatgaaaactccgtagcaatctcatataacatgtttgataagtctgtcatcgctaggaaagttgttaatcaatctggtttctttcaaatatt |
294 |
Q |
| |
|
||||||| ||| |||||| || | ||||||||| |||||||||||||| | |||||| || ||| | ||||||||||||||||||||||| |
|
|
| T |
36433526 |
aagatgacaacaatgtagcactcacgtataacatggttgataagtctgtcgttactaggatggtggttcagcaatctggtttctttcaaatatt |
36433619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 36425469 - 36425770
Alignment:
| Q |
1 |
gttccttcaatcctggaagacagatgatgaccctggaaaaggtgcgttcacggtggaattcagcaccattggtaaacctcagttgtttatgtacaaccat |
100 |
Q |
| |
|
|||||||||||| |||||||| || |||||||||||||||||||||||||| ||| |||||||||| ||||| ||||| ||||||||||||||||||| | |
|
|
| T |
36425469 |
gttccttcaatcatggaagaccgacgatgaccctggaaaaggtgcgttcaccgtgaaattcagcacaattggcaaaccgcagttgtttatgtacaaccgt |
36425568 |
T |
|
| Q |
101 |
aaccttccatggtggcgtgctggacattggaatggagaactgtttgcaggtgtacctaatatgaaacgagatatggaaacttttaacgtttcctttgtgg |
200 |
Q |
| |
|
| ||| | ||||||| |||||||||||| |||||| | || | |||| |||||||||||||||||||||||| | ||||||||| || || | |
|
|
| T |
36425569 |
gatgttcgtttctggcgtggtggacattggaacggagaaatattagtaggtctacctaatatgaaacgagatatggccgttcgtaacgtttctttcgttg |
36425668 |
T |
|
| Q |
201 |
aagatgaaaactccgtagcaatctcatataacatgtttgataagtctgtcatcgctaggaaagttgttaatcaatctggtttctttcaaatattcacgtg |
300 |
Q |
| |
|
||||||| |||| |||||| ||||||||||||||||| |||||| |||||| ||||| ||| ||| | ||||||||||||||||||| ||||||||| |
|
|
| T |
36425669 |
aagatgacaactatgtagcactctcatataacatgtttaataagtatgtcattactagggtagtggttcagcaatctggtttctttcaaacattcacgtg |
36425768 |
T |
|
| Q |
301 |
gg |
302 |
Q |
| |
|
|| |
|
|
| T |
36425769 |
gg |
36425770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 36387273 - 36387577
Alignment:
| Q |
1 |
gttccttcaatcctggaagacagatgatgaccctggaaaaggtgcgttcacggtggaattcagcaccattggtaaacctcagttgtttatgtacaaccat |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||| ||||| ||| |||||||||||||||| |||||||| |||| |||||||||||| |
|
|
| T |
36387273 |
gttccttcaatcctggaagacggatgatgaccctggaaatggtgcattcacagtgaaattcagcaccattggcaaacctcaagtgttaatgtacaaccat |
36387372 |
T |
|
| Q |
101 |
aaccttccatggtggcgtgctggacattggaatggagaactgtttgcaggtgtacctaatatgaaacgagatatggaaacttttaacgtttcctttgtgg |
200 |
Q |
| |
|
| ||||| |||||||| | |||||||||||| |||| | || ||||| |||| |||||||||||||||||| | ||| || ||||| ||| ||| |
|
|
| T |
36387373 |
gatcttccttggtggcgcggtggacattggaacggagcaaccttaataggtgcacctgatatgaaacgagatatggcgattttgaatgtttcttttttgg |
36387472 |
T |
|
| Q |
201 |
aa---gatgaaaactccgtagcaatctcatataacatgtttgataagtctgtcatcgctaggaaagttgttaatcaatctggtttctttcaaatattcac |
297 |
Q |
| |
|
|| ||||| |||| |||||| |||||||||||||||| | |||||||||||| ||||| ||| || | |||||||||||| |||||| ||||| |
|
|
| T |
36387473 |
aagatgatgataactatgtagcattctcatataacatgttcgctaagtctgtcataactagggtagtgattcagcaatctggtttccttcaaacattcag |
36387572 |
T |
|
| Q |
298 |
gtggg |
302 |
Q |
| |
|
||||| |
|
|
| T |
36387573 |
gtggg |
36387577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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