View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4270_low_2 (Length: 682)
Name: NF4270_low_2
Description: NF4270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4270_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-163; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 20 - 355
Target Start/End: Original strand, 24859643 - 24859978
Alignment:
| Q |
20 |
tgacatatttaagcttgaaaagaacaagttagtcatgaaagacctctttcatataaatacttgatctttgatgcggtgataaccttaaacaagcatcata |
119 |
Q |
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| T |
24859643 |
tgacatatttaaacctgaaaagaacaagttagtcatgaaagacctccttcatataaatagtggatctttgatgcggtgataaccttaaacaagcatcata |
24859742 |
T |
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| Q |
120 |
atgtactatatgattcaccaattctcttgaacaataaaccaaattttatataaatatttcatgattctcattttatttcttgcatcttcataagcatgga |
219 |
Q |
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| T |
24859743 |
atgtactatataattcaccaattctcttgaacaataagccaaactttatataaatatttcatgattctcattttatttcttgcatcttcataagcatgga |
24859842 |
T |
|
| Q |
220 |
ctactgatccaaaatcgttcactttgcaaagttaatttaatttcgcatcaaatacttctttttatttacttaatcattttactatttacaattattcata |
319 |
Q |
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| T |
24859843 |
ctactgatccaaaatcgttcactttgcaaagttaatttaatttcgcatcaaatacttctttttatttacttaatcattttactgattacaattattcatg |
24859942 |
T |
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| Q |
320 |
gactttgattcatgatccttattataatttttacat |
355 |
Q |
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| T |
24859943 |
gactttgattcatgatccttattataatttttacat |
24859978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 435 - 658
Target Start/End: Original strand, 24859976 - 24860199
Alignment:
| Q |
435 |
catctcctgtttaaaaaatcttatctcctcatttacacttatccagctattggttctttcacagtcacacggatcacgatccgtgccatcactcaactaa |
534 |
Q |
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| T |
24859976 |
catctcctgtttaaaaaatcttatctccccatttacacttatccagctattggttctttcacagtcacacggatcacgatccgtgccatcactcaactaa |
24860075 |
T |
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| Q |
535 |
ccaccacaaccgttgattagcttcttatcaacggccacactcactccacaatcaatcaaatctcaacaaaaccaaaattttcaaaacacatttcaaatcc |
634 |
Q |
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|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24860076 |
ccactacaaccgttgattagcttcttatcaacggccacattcactccacaatcaatcaaatctcaacaaaaccaaaaatttcaaaacacatttcaaatcc |
24860175 |
T |
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| Q |
635 |
cgcgcttcactcttcttacacccc |
658 |
Q |
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||||| |||||||||||||||||| |
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| T |
24860176 |
cgcgcctcactcttcttacacccc |
24860199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 136 - 297
Target Start/End: Original strand, 18900288 - 18900449
Alignment:
| Q |
136 |
accaattctcttgaacaataaaccaaattttatataaatatttcatgattctcattttatttcttgcatcttcataagcatggactactgatcc-aaaat |
234 |
Q |
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|||||| |||||||| | ||| ||||| | ||||||||||||| || ||||||||||||||| ||||||||||||| ||||||||||||| ||| ||||| |
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| T |
18900288 |
accaatactcttgaatattaagccaaactgtatataaatattttatcattctcattttattt-ttgcatcttcatatgcatggactactggtccaaaaat |
18900386 |
T |
|
| Q |
235 |
cgttcactttgcaaagttaatttaatttcgcatcaaatacttctttttatttacttaatcatt |
297 |
Q |
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||| |||| ||||||| ||||||||||||||||| | |||||| ||||| | ||||||| |
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| T |
18900387 |
tattcccttttaaaagttagattaatttcgcatcaaatgcatcttttcatttaatcaatcatt |
18900449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 151 - 366
Target Start/End: Original strand, 23631838 - 23632053
Alignment:
| Q |
151 |
caataaaccaaattttatataaatatttcatgattctcattttatttcttgcatcttcataagcatggactactgatccaaaatcg-ttcactttgcaaa |
249 |
Q |
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|||||||||||| ||||||||| || ||||||||||||||||||||| | |||||||||| |||||||||| || | ||||| | ||| ||||| ||| |
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| T |
23631838 |
caataaaccaaagtttatataagtaattcatgattctcattttattt-tcacatcttcatatgcatggactattggttcaaaaaccattcgctttgtaaa |
23631936 |
T |
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| Q |
250 |
gttaatttaatttcgcatcaaatacttctttttatttacttaatcattttactatttacaattattcatagactttgattcatgatccttattataattt |
349 |
Q |
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| |||| ||||||||||||| | |||||| ||||| | |||| ||||| | | ||| | |||||||||||||||||||||||||||| |||| |
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| T |
23631937 |
tcaattttagtttcgcatcaaatgcgtcttttcatttagtcaatccttttattgcatgtaatcctgaatagactttgattcatgatccttattatcattt |
23632036 |
T |
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| Q |
350 |
ttacatataacactata |
366 |
Q |
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||||||||||| ||||| |
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| T |
23632037 |
ttacatataacgctata |
23632053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 321 - 366
Target Start/End: Complemental strand, 9396669 - 9396624
Alignment:
| Q |
321 |
actttgattcatgatccttattataatttttacatataacactata |
366 |
Q |
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|||||||||||| |||||| |||| ||||||||||||||||||||| |
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| T |
9396669 |
actttgattcataatccttgttatcatttttacatataacactata |
9396624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 166 - 338
Target Start/End: Complemental strand, 27316366 - 27316193
Alignment:
| Q |
166 |
tatataaatatttcatgattctcattttatttcttgcatcttcataagcatggactactgatccaaaatcg--ttcactttgcaaagttaatttaatttc |
263 |
Q |
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|
||||| |||| ||||||||||||||||||||| | || |||||| | ||||||||||| ||||||| | ||| ||||||||| ||| ||||||||| |
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| T |
27316366 |
tatatcaataattcatgattctcattttattt-tcatatattcatatgtatggactactggtccaaaaaccatttctctttgcaaaattagtttaatttc |
27316268 |
T |
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| Q |
264 |
gcatcaaatacttctttttatttacttaatcattttactatttacaattattcatagactttgattcatgatcct |
338 |
Q |
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||||||||| | ||||| ||||||| ||||||||||| | || ||| ||||||||||||||||||||||||| |
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| T |
27316267 |
gcatcaaattcatctttcaatttactcaatcattttaccgtctataatccttcatagactttgattcatgatcct |
27316193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 233
Target Start/End: Complemental strand, 14603314 - 14603213
Alignment:
| Q |
133 |
ttcaccaattctcttgaacaataaaccaaa--ttttatataaatatttcatgattctcattttatttcttgcatcttcataagcatggactactgatcca |
230 |
Q |
| |
|
||||||||| |||||||||||||| || || || |||||||||| ||||| ||||| ||||||||| || ||| |||| | |||||||||| || |||| |
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| T |
14603314 |
ttcaccaatactcttgaacaataagcccaactttatatataaataattcataattcttattttattt-ttacatattcagatgcatggactattggtcca |
14603216 |
T |
|
| Q |
231 |
aaa |
233 |
Q |
| |
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||| |
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| T |
14603215 |
aaa |
14603213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 18785751 - 18785837
Alignment:
| Q |
133 |
ttcaccaattctcttgaacaataaaccaaattttatataaatatttcatgattctcatttta-tttcttgcatcttcataagcatgg |
218 |
Q |
| |
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|||||||||||||||||||||||| |||| ||||||||||||||| |||||| |||||||| ||| ||||||||||||| |||||| |
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| T |
18785751 |
ttcaccaattctcttgaacaataagtcaaactttatataaatattttatgattatcattttatttttttgcatcttcatatgcatgg |
18785837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 126
Target Start/End: Original strand, 18785614 - 18785703
Alignment:
| Q |
37 |
aaaagaacaagttagtcatgaaagacctctttcatataaatacttgatctttgatgcggtgataaccttaaacaagcatcataatgtact |
126 |
Q |
| |
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|||||||||||||||||||||||||| || |||||| ||||| | ||||||| ||||||||||| | |||| ||| || |||||||||| |
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| T |
18785614 |
aaaagaacaagttagtcatgaaagacttccttcatagaaatattggatctttaatgcggtgatagcgttaattaagtatgataatgtact |
18785703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 358
Target Start/End: Complemental strand, 9924376 - 9924343
Alignment:
| Q |
325 |
tgattcatgatccttattataatttttacatata |
358 |
Q |
| |
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|||||||||||||| ||||||||||||||||||| |
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| T |
9924376 |
tgattcatgatcctcattataatttttacatata |
9924343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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