View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4270_low_21 (Length: 324)

Name: NF4270_low_21
Description: NF4270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4270_low_21
NF4270_low_21
[»] chr2 (4 HSPs)
chr2 (73-307)||(39925601-39925843)
chr2 (163-307)||(39915722-39915875)
chr2 (10-139)||(39915628-39915755)
chr2 (10-50)||(39925874-39925914)
[»] chr3 (3 HSPs)
chr3 (94-234)||(3172226-3172364)
chr3 (13-50)||(45085058-45085095)
chr3 (10-38)||(3172368-3172396)
[»] chr5 (6 HSPs)
chr5 (10-139)||(37550689-37550826)
chr5 (10-139)||(37653518-37653655)
chr5 (73-139)||(37722269-37722335)
chr5 (163-229)||(37550656-37550722)
chr5 (163-229)||(37653485-37653551)
chr5 (163-229)||(37722236-37722302)


Alignment Details
Target: chr2 (Bit Score: 104; Significance: 8e-52; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 73 - 307
Target Start/End: Complemental strand, 39925843 - 39925601
Alignment:
Q  73 aatcaacgaataaatacaacaatcacgacttcaaacttgtgattgcaattttaagagcataaaacatggatatataaataccttggacttaacttgtgat 172  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||  ||||||||||| |||| |||||| ||||    
T  39925843 aatcaacgaacaaatacaacaatcatgacttcaaacttgtgattgcaatttcatgagcataaaacatgga--tataaatacctcggacctaacttatgat 39925746  T
Q  173 tgtaatttcatgagcataaaacattaattgcttcctgtataatgctccttgcttcaagctc-------acct----gtagcttaagatgacacgtctacc 261  Q
    || ||||| | |||||||||||||||  |||||||||||| ||||||||||||||||||||       ||||    ||||||||||| ||||| ||| ||    
T  39925745 tgcaattttaagagcataaaacattacatgcttcctgtattatgctccttgcttcaagctcaagttatacctctaagtagcttaagaagacacttctgcc 39925646  T
Q  262 ctattctgagcatctagcaattctccaaggttcaaaccaaaggttc 307  Q
    | ||||||||||||||| |||||| |||||||  ||||||||||||    
T  39925645 ccattctgagcatctagtaattcttcaaggtt-gaaccaaaggttc 39925601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 163 - 307
Target Start/End: Original strand, 39915722 - 39915875
Alignment:
Q  163 aacttgtgattgtaatttcatgagcataaaacattaattgcttcctgtataatgctccttgcttcaagctcacct---------gtagcttaagatgaca 253  Q
    |||||||||||| || |||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||  |         | ||||||||| ||||    
T  39915722 aacttgtgattgcaacttcaagagcataaaacattacttgcttcctgtataatgctccttgcttctagctcaggttgactctaaggagcttaagaagaca 39915821  T
Q  254 cgtctaccctattctgagcatctagcaattctccaaggttcaaaccaaaggttc 307  Q
    |  || ||| |||||||||||||||||||||| |||||||||||| ||||||||    
T  39915822 ctgctgccccattctgagcatctagcaattcttcaaggttcaaactaaaggttc 39915875  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 139
Target Start/End: Original strand, 39915628 - 39915755
Alignment:
Q  10 catcatcaaacttagtgctttttctcaatgacgtaaacttcccacatac----aacacgaatttcaaaatcaacgaataaatacaacaatcacgacttca 105  Q
    |||||||||||||||||||||||||||||||  |||||||| ||| | |    |||| |||||||||||||||  ||      | ||||||||||||| |    
T  39915628 catcatcaaacttagtgctttttctcaatgaaataaacttctcacgtgcctgcaacatgaatttcaaaatcaatcaa------cgacaatcacgacttta 39915721  T
Q  106 aacttgtgattgcaattttaagagcataaaacat 139  Q
    ||||||||||||||| || |||||||||||||||    
T  39915722 aacttgtgattgcaacttcaagagcataaaacat 39915755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 39925914 - 39925874
Alignment:
Q  10 catcatcaaacttagtgctttttctcaatgacgtaaacttc 50  Q
    ||||||||||||| ||| |||||||||||||| ||||||||    
T  39925914 catcatcaaacttggtgttttttctcaatgacataaacttc 39925874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 94 - 234
Target Start/End: Complemental strand, 3172364 - 3172226
Alignment:
Q  94 atcacgacttcaaacttgtgattgcaattttaagagcataaaacatggatatataaataccttggacttaacttgtgattgtaatttcatgagcataaaa 193  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||| |||||||| |||| |||| ||  |||||||||    
T  3172364 atcacgacttcaaacttgtgattgcaatttcaagagcataaaacatggatata--aataccttggacctaacttgtcattgcaattccaaaagcataaaa 3172267  T
Q  194 cattaattgcttcctgtataatgctccttgcttcaagctca 234  Q
    |||||  ||| ||||||||||||||||||||||||||||||    
T  3172266 cattacctgcatcctgtataatgctccttgcttcaagctca 3172226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 45085095 - 45085058
Alignment:
Q  13 catcaaacttagtgctttttctcaatgacgtaaacttc 50  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  45085095 catcaaacttggtgctttttctcaatgacataaacttc 45085058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 3172396 - 3172368
Alignment:
Q  10 catcatcaaacttagtgctttttctcaat 38  Q
    |||||||||||||||||||||||||||||    
T  3172396 catcatcaaacttagtgctttttctcaat 3172368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 37550826 - 37550689
Alignment:
Q  10 catcatcaaacttagtgctttttctcaatgacgtaaacttcccacatac----aacacgaatttcaaaatcaa----cgaataaatacaacaatcacgac 101  Q
    |||||||||||||||||||||||||||||||| |||||||| ||| | |    | || ||||||| |||||||    | |||||||||||||||||||||    
T  37550826 catcatcaaacttagtgctttttctcaatgacataaacttctcacgtgcctgcagcatgaatttcgaaatcaatcaacaaataaatacaacaatcacgac 37550727  T
Q  102 ttcaaacttgtgattgcaattttaagagcataaaacat 139  Q
    |||||||||||||||||||||| |||||||||||||||    
T  37550726 ttcaaacttgtgattgcaatttcaagagcataaaacat 37550689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 37653655 - 37653518
Alignment:
Q  10 catcatcaaacttagtgctttttctcaatgacgtaaacttcccacatac----aacacgaatttcaaaatcaa----cgaataaatacaacaatcacgac 101  Q
    |||||||||||||||||||||||||||||||| |||||||| ||| | |    | || ||||||| |||||||    | |||||||||||||||||||||    
T  37653655 catcatcaaacttagtgctttttctcaatgacataaacttctcacgtgcctgcagcatgaatttcgaaatcaatcaacaaataaatacaacaatcacgac 37653556  T
Q  102 ttcaaacttgtgattgcaattttaagagcataaaacat 139  Q
    |||||||||||||||||||||| |||||||||||||||    
T  37653555 ttcaaacttgtgattgcaatttcaagagcataaaacat 37653518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 37722335 - 37722269
Alignment:
Q  73 aatcaacgaataaatacaacaatcacgacttcaaacttgtgattgcaattttaagagcataaaacat 139  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  37722335 aatcaacaaataaatacaacaatcacgacttcaaacttgtgattgcaatttcaagagcataaaacat 37722269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 37550722 - 37550656
Alignment:
Q  163 aacttgtgattgtaatttcatgagcataaaacattaattgcttcctgtataatgctccttgcttcaa 229  Q
    |||||||||||| ||||||| |||||||||||||||  ||||||||  ||| |||||||||||||||    
T  37550722 aacttgtgattgcaatttcaagagcataaaacattacctgcttcctaaatattgctccttgcttcaa 37550656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 37653551 - 37653485
Alignment:
Q  163 aacttgtgattgtaatttcatgagcataaaacattaattgcttcctgtataatgctccttgcttcaa 229  Q
    |||||||||||| ||||||| |||||||||||||||  ||||||||  ||| |||||||||||||||    
T  37653551 aacttgtgattgcaatttcaagagcataaaacattacctgcttcctaaatattgctccttgcttcaa 37653485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 37722302 - 37722236
Alignment:
Q  163 aacttgtgattgtaatttcatgagcataaaacattaattgcttcctgtataatgctccttgcttcaa 229  Q
    |||||||||||| ||||||| |||||||||||||||  ||||||||  ||| |||||||||||||||    
T  37722302 aacttgtgattgcaatttcaagagcataaaacattacctgcttcctaaatattgctccttgcttcaa 37722236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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